Decoherence and Dynamical Entropy Generation in Quantum Field Theory

We formulate a novel approach to decoherence based on neglecting observationally inaccessible correlators. We apply our formalism to a renormalised interacting quantum field theoretical model. Using out-of-equilibrium field theory techniques we show that the Gaussian von Neumann entropy for a pure quantum state increases to the interacting thermal entropy. This quantifies decoherence and thus measures how classical our pure state has become. The decoherence rate is equal to the single particle decay rate in our model. We also compare our approach to existing approaches to decoherence in a simple quantum mechanical model. We show that the entropy following from the perturbative master equation suffers from physically unacceptable secular growth

Modulation Response of a Long-cavity, Gain-levered Quantum-dot Semiconductor Laser

The gain-lever effect enhances the modulation efficiency of a semiconductor laser when compared to modulating the entire laser. This technique is investigated in a long-cavity multi-section quantum-dot laser where the length of the modulation section is varied to achieve 14:2, 15:1 and 0:16 gain-to-modulation section ratios. In this work, the gain-levered modulation configuration resulted in an increase in modulation efficiency by as much as 16 dB. This investigation also found that the 3-dB modulation bandwidth and modulation efficiency are dependent on the modulation section length of the device, indicating the existence of an optimal gain-to-modulation section ratio. The long cavity length of the multi-section laser yielded a distinctive case where characteristics of both the gain-lever effect and spatial effects are observed in the modulation response. Here, spatial effects within the cavity dominated the small-signal modulation response close to and above the cavity’s free-spectral range frequency, whereas the gain-lever effect influenced the modulation response throughout the entirety of the response

How Chromophore Labels Shape the Structure and Dynamics of a Peptide Hydrogel

Biocompatible and functionalizable hydrogels have a wide range of (potential) medicinal applications. The hydrogelation process, particularly for systems with very low polymer weight percentages (<1 wt %), remains poorly understood, making it challenging to predict the self-assembly of a given molecular building block into a hydrogel. This severely hinders the rational design of self-assembled hydrogels. In this study, we demonstrate the impact of an N-terminal group on the self-assembly and rheology of the peptide hydrogel hFF03 (hydrogelating, fibril forming peptide 03) using molecular dynamics simulations, oscillatory shear rheology, and circular dichroism spectroscopy. We find that the chromophore and even its specific regioisomers have a significant influence on the microscopic structure and dynamics of the self-assembled fibril, and on the macroscopic mechanical properties. This is because the chromophore influences the possible salt bridges, which form and stabilize the fibril formation. Furthermore, we find that the solvation shell fibrils by itself cannot explain the viscoelasticity of hFF03 hydrogels. Our atomistic model of the hFF03 fibril formation enables a more rational design of these hydrogels. In particular, altering the N-terminal chromophore emerges as a design strategy to tune the mechanic properties of these self-assembled peptide hydrogels

How chromophore labels shape the structure and dynamics of a peptide hydrogel

Biocompatible and functionalizable hydrogels have a wide range of (potential) medicinal applications. In contrast to conventional hydrogels formed by interconnected or interlocked polymer chains, self-assembled hydrogels form from small building blocks like short peptide chains. This has the advantage that the building blocks can be functionalized separately and then mixed to obtain the desired properties. However, the hydrogelation process for these systems, especially those with very low polymer weight percentage (< 1 wt%), is not well understood, and therefore it is hard to predict whether a given molecular building block will self-assemble into a hydrogel. This severely hinders the rational design of self-assembled hydrogels. In this study, we demonstrate the impact of an N-terminal chromophore label amino-benzoic acid on the self-assembly and rheology of hydrogel hFF03 (hydrogelating, fibril forming) using molecular dynamics simulations, which self-assembles into {\alpha}-helical coiled-coils. We find that the chromophore and even its specific regioisomers have a significant influence on the microscopic structure and dynamics of the self-assembled fibril, and on the macroscopic mechanical properties. This is because the chromophore influences the possible salt-bridges which form and stabilize the fibril formation. Furthermore we find that the solvation shell fibrils by itself cannot explain the viscoelasticity of hFF03 hydrogels. Our atomistic model of the hFF03 fibril formation enables a more rational design of these hydrogels. In particular, altering the N-terminal chromophore emergesas a design strategy to tune the mechanic properties of these self-assembled peptide hydrogels.Comment: 15 pages, 15 including appendi

Decoherence in an Interacting Quantum Field Theory: Thermal Case

We study the decoherence of a renormalised quantum field theoretical system. We consider our novel correlator approach to decoherence where entropy is generated by neglecting observationally inaccessible correlators. Using out-of-equilibrium field theory techniques at finite temperatures, we show that the Gaussian von Neumann entropy for a pure quantum state asymptotes to the interacting thermal entropy. The decoherence rate can be well described by the single particle decay rate in our model. Connecting to electroweak baryogenesis scenarios, we moreover study the effects on the entropy of a changing mass of the system field. Finally, we compare our correlator approach to existing approaches to decoherence in the simple quantum mechanical analogue of our field theoretical model. The entropy following from the perturbative master equation suffers from physically unacceptable secular growth.Comment: 36 pages, 22 figure

Production of crystallizable human chymase from a Bacillus subtilis system

AbstractA Bacillus subtilis strain deficient in seven extracellular proteases was used to produce human mast cell chymase and is a viable expression system for serine proteases and other classes of proteins. Chymase is produced at 0.3–0.5 mg/l and is purified by three chromatography steps. Two crystal forms of PMSF-treated chymase were optimized. The first is C2 with a=47.94 Å, b=85.23 Å, c=174.18 Å, β=96.74°, and diffracts to at least 2.1 Å, while the second is P212121, with cell dimensions a=43.93 Å, b=58.16 Å, and c=86.09 Å, and a diffraction limit of approximately 1.9 Å. The first crystal form has either three or four molecules/asymmetric unit, while the second has one molecule/asymmetric unit

Decoherence in an Interacting Quantum Field Theory: The Vacuum Case

We apply the decoherence formalism to an interacting scalar field theory. In the spirit of the decoherence literature, we consider a "system field" and an "environment field" that interact via a cubic coupling. We solve for the propagator of the system field, where we include the self-energy corrections due to the interaction with the environment field. In this paper, we consider an environment in the vacuum state (T=0). We show that neglecting inaccessible non-Gaussian correlators increases the entropy of the system as perceived by the observer. Moreover, we consider the effect of a changing mass of the system field in the adiabatic regime, and we find that at late times no additional entropy has been generated.Comment: 40 pages, published versio

(Metallo)porphyrins for potential materials science applications

The bottom-up approach to replace existing devices by molecular-based systems is a subject that attracts permanently increasing interest. Molecular-based devices offer not only to miniaturize the device further, but also to benefit from advanced functionalities of deposited molecules. Furthermore, the molecules itself can be tailored to allow via their self-assembly the potential fabrication of devices with an application potential, which is still unforeseeable at this time. Herein, we review efforts to use discrete (metallo)porphyrins for the formation of (sub)monolayers by surface-confined polymerization, of monolayers formed by supramolecular recognition and of thin films formed by sublimation techniques. Selected physical properties of these systems are reported as well. The application potential of those ensembles of (metallo)porphyrins in materials science is discussed