Microbial community dynamics in soil depth profiles over 120,000 years of ecosystem development

Along a long-term ecosystem development gradient, soil nutrient contents and mineralogical properties change, therefore probably altering soil microbial communities. However, knowledge about the dynamics of soil microbial communities during long-term ecosystem development including progressive and retrogressive stages is limited, especially in mineral soils. Therefore, microbial abundances (quantitative PCR) and community composition (pyrosequencing) as well as their controlling soil properties were investigated in soil depth profiles along the 120,000 years old Franz Josef chronosequence (New Zealand). Additionally, in a microcosm incubation experiment the effects of particular soil properties, i.e., soil age, soil organic matter fraction (mineral-associated vs. particulate), O2 status, and carbon and phosphorus additions, on microbial abundances (quantitative PCR) and community patterns (T-RFLP) were analyzed. The archaeal to bacterial abundance ratio not only increased with soil depth but also with soil age along the chronosequence, coinciding with mineralogical changes and increasing phosphorus limitation. Results of the incubation experiment indicated that archaeal abundances were less impacted by the tested soil parameters compared to Bacteria suggesting that Archaea may better cope with mineral-induced substrate restrictions in subsoils and older soils. Instead, archaeal communities showed a soil age-related compositional shift with the Bathyarchaeota, that were frequently detected in nutrient-poor, low-energy environments, being dominant at the oldest site. However, bacterial communities remained stable with ongoing soil development. In contrast to the abundances, the archaeal compositional shift was associated with the mineralogical gradient. Our study revealed, that archaeal and bacterial communities in whole soil profiles are differently affected by long-term soil development with archaeal communities probably being better adapted to subsoil conditions, especially in nutrient-depleted old soils

Quinpramine Ameliorates Rat Experimental Autoimmune Neuritis and Redistributes MHC Class II Molecules

Activation of inflammatory cells is central to the pathogenesis of autoimmune demyelinating diseases of the peripheral nervous system. The novel chimeric compound quinpramine—generated from imipramine and quinacrine—redistributes cholesterol rich membrane domains to intracellular compartments. We studied the immunological and clinical effects of quinpramine in myelin homogenate induced Lewis rat experimental autoimmune neuritis (EAN), a model system for acute human inflammatory neuropathies, such as the Guillain-Barré syndrome. EAN animals develop paresis of all limbs due to autoimmune inflammation of peripheral nerves. Quinpramine treatment ameliorated clinical disease severity of EAN and infiltration of macrophages into peripheral nerves. It reduced expression of MHC class II molecules on antigen presenting cells and antigen specific T cell proliferation both in vitro and in vivo. Quinpramine exerted its anti-proliferatory effect on antigen presenting cells, but not on responder T cells. Our data suggest that quinpramine represents a candidate pharmaceutical for inflammatory neuropathies

Iron Behaving Badly: Inappropriate Iron Chelation as a Major Contributor to the Aetiology of Vascular and Other Progressive Inflammatory and Degenerative Diseases

The production of peroxide and superoxide is an inevitable consequence of aerobic metabolism, and while these particular "reactive oxygen species" (ROSs) can exhibit a number of biological effects, they are not of themselves excessively reactive and thus they are not especially damaging at physiological concentrations. However, their reactions with poorly liganded iron species can lead to the catalytic production of the very reactive and dangerous hydroxyl radical, which is exceptionally damaging, and a major cause of chronic inflammation. We review the considerable and wide-ranging evidence for the involvement of this combination of (su)peroxide and poorly liganded iron in a large number of physiological and indeed pathological processes and inflammatory disorders, especially those involving the progressive degradation of cellular and organismal performance. These diseases share a great many similarities and thus might be considered to have a common cause (i.e. iron-catalysed free radical and especially hydroxyl radical generation). The studies reviewed include those focused on a series of cardiovascular, metabolic and neurological diseases, where iron can be found at the sites of plaques and lesions, as well as studies showing the significance of iron to aging and longevity. The effective chelation of iron by natural or synthetic ligands is thus of major physiological (and potentially therapeutic) importance. As systems properties, we need to recognise that physiological observables have multiple molecular causes, and studying them in isolation leads to inconsistent patterns of apparent causality when it is the simultaneous combination of multiple factors that is responsible. This explains, for instance, the decidedly mixed effects of antioxidants that have been observed, etc...Comment: 159 pages, including 9 Figs and 2184 reference

Mineralogical impact on long-term patterns of soil nitrogen and phosphorus enzyme activities

During long-term ecosystem development, both soil mineralogical composition and nutrient contents change, thus possibly altering microbial nutrient cycling by constraining substrate accessibility. In addressing the mineral impact on nitrogen (N) and phosphorus (P) cycling, we determined microbial abundances, activities of N-hydrolyzing (aminopeptidases, protease, urease) and P-hydrolyzing (phosphatase) enzymes and the potential substrate availability as well as their physicochemical and mineralogical controls in whole soil profiles along the 120 kyr-old Franz Josef chronosequence (New Zealand). Pedogenic soil iron (Fe) and aluminum (Al) resided initially (<1 kyrs) in metal-humus complexes, changed to poorly crystalline Fe and Al at intermediate-aged sites (1–12 kyrs) and into dominance of clay and crystalline Fe oxides at the oldest site. Despite this, organic C (OC) and organic N (ON) stocks increased only slightly with soil age, whereas organic P (OP) stocks decreased continuously. In organic layers, enzyme activities were mainly regulated by ON and OP concentrations, whereas in mineral soils, mineral–enzyme relations were more complex and included both, direct and indirect effects. Protease, urease, and phosphatase activities were inhibited by mineral interactions, especially with poorly crystalline Fe and Al oxides, whereas aminopeptidases were less affected by mineralogical properties. On a pedon basis, most N-hydrolyzing enzyme activities per ON stocks responded negatively to increasing stocks of poorly crystalline Fe and Al minerals, but were also affected by the C:N ratio of labile organic substrates. Profile-based phosphatase activities per OP stock were highest at the oldest sites having the largest stocks of clay and crystalline Fe oxides. Overall, our study indicates that long-term mineral changes create distinct patterns of nutrient accumulation and N- and P-enzyme activities at both horizon and pedon scale, with a variable extent of the mineralogical effect for the different N-hydrolyzing enzymes

Microbial and abiotic controls on mineral-associated organic matter in soil profiles along an ecosystem gradient

Formation of mineral-organic associations is a key process in the global carbon cycle. Recent concepts propose litter quality-controlled microbial assimilation and direct sorption processes as main factors in transferring carbon from plant litter into mineral-organic associations. We explored the pathways of the formation of mineral-associated organic matter (MOM) in soil profiles along a 120-ky ecosystem gradient that developed under humid climate from the retreating Franz Josef Glacier in New Zealand. We determined the stocks of particulate and mineral-associated carbon, the isotope signature and microbial decomposability of organic matter, and plant and microbial biomarkers (lignin phenols, amino sugars and acids) in MOM. Results revealed that litter quality had little effect on the accumulation of mineral-associated carbon and that plant-derived carbon bypassed microbial assimilation at all soil depths. Seemingly, MOM forms by sorption of microbial as well as plant-derived compounds to minerals. The MOM in carbon-saturated topsoil was characterized by the steady exchange of older for recent carbon, while subsoil MOM arises from retention of organic matter transported with percolating water. Overall, MOM formation is not monocausal but involves various mechanisms and processes, with reactive minerals being effective filters capable of erasing chemical differences in organic matter inputs

Complexity of clay mineral formation during 120,000 years of soil development along the Franz Josef chronosequence, New Zealand

<p>Weathering of primary silicates to secondary clay minerals over time affects multiple soil functions such as the accumulation of organic matter and nutrient cations. However, the extent of clay mineral (trans)formation as a function of soil development is poorly understood. In this study, the degree of weathering of sediments along a 120 kyr soil formation gradient was investigated using X‐ray diffraction, Fourier transform infrared spectroscopy and X‐ray fluorescence spectroscopy. Irrespective of site age, mica and chlorite were the dominant clay minerals. During weathering, a remarkable suite of transitional phases such as vermiculite and several interstratifications with vermiculitic, smectitic, chloritic and micaceous layers developed. The degree of weathering was correlated with soil pH and depletion of K, Ca, Na, Fe and Al, regarding both soil depth and site age. Kaolinite occurred especially at the 120 kyr site, indicating slow formation via transitional phases. The findings of this study revealed that long-term soil development caused complex clay mineral assemblages, both temporally and spatially, and linking this variability to soil functioning warrants further research.</p

Targeting dendritic cells to treat multiple sclerosis

Multiple sclerosis (MS) is considered to be a predominantly T-cell-mediated disease, and emerging evidence indicates that dendritic cells have a critical role in the initiation and progression of this debilitating condition. Dendritic cells are specialized antigen-presenting cells that can prime naive T cells and modulate adaptive immune responses. Their powerful biological functions indicate that these cells can be exploited by immunotherapeutic approaches. Therapies that inhibit the immunogenic actions of dendritic cells through the blockade of proinflammatory cytokine production and T cell co-stimulatory pathways are currently being pursued. Furthermore, novel strategies that can regulate dendritic cell development and differentiation and harness the tolerogenic capacity of these cells are also being developed. Here, we evaluate the prospects of these future therapeutic strategies, which focus on dendritic cells and dendritic cell-related targets to treat MS