Transition on the entropic elasticity of DNA induced by intercalating molecules

We use optical tweezers to perform stretching experiments on DNA molecules when interacting with the drugs daunomycin and ethidium bromide, which intercalate the DNA molecule. These experiments are performed in the low-force regime from zero up to 2 pN. Our results show that the persistence length of the DNA-drug complexes increases strongly as the drug concentration increases up to some critical value. Above this critical value, the persistence length decreases abruptly and remains practically constant for larger drug concentrations. The contour length of the molecules increases monotonically and saturates as drugs concentration increases. Measured in- tercalants critical concentrations for the persistence length transition coincide with reported values for the helix-coil transition of DNA-drug complexes, obtained from sedimentation experiments.Comment: This experimental article shows and discuss a transition observed in the persistence length of DNA molecules when studied as a function of some intercalating drug concentrations, like daunomycin and ethidium bromide. It has 15 pages and 4 figures. The article presented here is in preprint forma

Coastal evolution in a Mediterranean microtidal zone: mid to late Holocene natural dynamics and human management of the Castelló lagoon, NE Spain

© 2016 Ejarque et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. We present a palaeoenvironmental study of the Castelló lagoon (NE Spain), an important archive for understanding long-term interactions between dynamic littoral ecosystems and human management. Combining geochemistry, mineralogy, ostracods, diatoms, pollen, non-pollen palynomorphs, charcoal and archaeo-historical datasets we reconstruct: 1) the transition of the lagoon from a marine to a marginal environment between ∼ 3150 cal BC to the 17 th century AD; 2) fluctuations in salinity; and 3) natural and anthropogenic forces contributing to these changes. From the Late Neolithic to the Medieval period the lagoon ecosystem was driven by changing marine influence and the land was mainly exploited for grazing, with little evidence for impact on the natural woodland. Land-use exploitation adapted to natural coastal dynamics, with maximum marine flooding hampering agropastoral activities between ∼ 1550 and ∼ 150 cal BC. In contrast, societies actively controlled the lagoon dynamics and become a major agent of landscape transformation after the Medieval period. The removal of littoral woodlands after the 8 th century was followed by the expansion of agrarian and industrial activities. Regional mining and smelting activities polluted the lagoon with heavy metals from the ∼ 11 th century onwards. The expansion of the milling industry and of agricultural lands led to the channelization of the river Muga into the lagoon after ∼ 1250 cal AD. This caused its transformation into a freshwater lake, increased nutrient load, and the infilling and drainage of a great part of the lagoon. By tracking the shift towards an anthropogenically-controlled system around∼ 750 yr ago, this study points out Mediterranean lagoons as ancient and heavily-modified systems, with anthropogenic impacts and controls covering multi-centennial and even millennial timescales. Finally, we contributed to the future construction of reliable seashell-based chronologies in NE Spain by calibrating the Banyuls-sur-Mer ▵ R offset with ceramic imports from the Emporiae archaeological site

Importância e métodos de controle do "moleque" ou broca-do-rizoma-da-bananeira.

É no rizoma que se encontra a principal praga da bananicultura brasileira. Trate-e da especie Cosmopolites sordidus Gemar 1824, conhecida vulgarmente como "moleque", broca-do-rizoma ou broca-da-bananeira; Decricao e ciclo biológico; Danos e importância econômica; Medidas de controle; Utilizacao de mudas livres de infestacao; Utilizacao de iscas atrativas; Variedades resistentes; Controle biologico; Controle quimico; Controle por comportamentobitstream/CNPAT-2010/8608/1/Ci-017.pd

Towards absolute calibration of optical tweezers

Aiming at absolute force calibration of optical tweezers, following a critical review of proposed theoretical models, we present and test the results of MDSA (Mie-Debye-Spherical Aberration) theory, an extension of a previous (MD) model, taking account of spherical aberration at the glass/water interface. This first-principles theory is formulated entirely in terms of experimentally accessible parameters (none adjustable). Careful experimental tests of the MDSA theory, undertaken at two laboratories, with very different setups, are described. A detailed description is given of the procedures employed to measure laser beam waist, local beam power at the transparent microspheres trapped by the tweezers, microsphere radius and the trap transverse stiffness, as a function of radius and height in the (inverted microscope) sample chamber. We find generally very good agreement with MDSA theory predictions, for a wide size range, from the Rayleigh domain to large radii, including the values most often employed in practice, and at different chamber heights, both with objective overfilling and underfilling. The results asymptotically approach geometrical optics in the mean over size intervals, as they should, and this already happens for size parameters not much larger than unity. MDSA predictions for the trapping threshold, position of stiffness peak, stiffness variation with height, multiple equilibrium points and `hopping' effects among them are verified. Remaining discrepancies are ascribed to focus degradation, possibly arising from objective aberrations in the infrared, not yet included in MDSA theory.Comment: 15 pages, 20 figure

DNA-psoralen: single-molecule experiments and first principles calculations

The authors measure the persistence and contour lengths of DNA-psoralen complexes, as a function of psoralen concentration, for intercalated and crosslinked complexes. In both cases, the persistence length monotonically increases until a certain critical concentration is reached, above which it abruptly decreases and remains approximately constant. The contour length of the complexes exhibits no such discontinuous behavior. By fitting the relative increase of the contour length to the neighbor exclusion model, we obtain the exclusion number and the intrinsic intercalating constant of the psoralen-DNA interaction. Ab initio calculations are employed in order to provide an atomistic picture of these experimental findings.Comment: 9 pages, 4 figures in re-print format 3 pages, 4 figures in the published versio

Novas incidências de insetos em cajueiro no Nordeste do Brasil.

Com o objetivo de se conhecer a importância e distribuição geográfica das pragas do cajueiro, constatou-se que além da ocorrência de insetos e ácaros, já conhecidos para algumas regiões, outras espécies, ainda não citadas como pragas, usam esta anacardiácea como planta hospedeira.bitstream/CNPAT-2010/8839/1/Pa-004.pd