Skin Disinfection by Plasma-Tissue Interaction: Comparison of the Effectivity of Tissue-Tolerable Plasma and a Standard Antiseptic

Wound healing disorders frequently occur due to biofilm formation on wound surfaces requiring conscientious wound hygiene. Often, the application of conventional liquid antiseptics is not sufficient and sustainable as (1) the borders and the surrounding of chronic wounds frequently consist of sclerotic skin, impeding an effectual penetration of these products, and (2) the hair follicles representing the reservoir for bacterial recolonization of skin surfaces are not affected. Recently, it has been reported that tissue-tolerable plasma (TTP), which is used at a temperature range between 35 and 45°C, likewise has disinfecting properties. In the present study, the effectivity of TTP and a standard liquid antiseptic was compared in vitro on porcine skin. The results revealed that TTP was able to reduce the bacterial load by 94%, although the application of the liquid antiseptic remained superior as it reduced the bacteria by almost 99%. For in vivo application, however, TTP offers several advantages. On the one hand, TTP enables the treatment of sclerotic skin as well, and on the other hand, a sustainable disinfection can be realized as, obviously, also the follicular reservoir is affected by TTP

Integrating the Genetic and Physical Maps of Arabidopsis thaliana: Identification of Mapped Alleles of Cloned Essential (EMB) Genes

The classical genetic map of Arabidopsis includes more than 130 genes with an embryo-defective (emb) mutant phenotype. Many of these essential genes remain to be cloned. Hundreds of additional EMB genes have been cloned and catalogued (www.seedgenes.org) but not mapped. To facilitate EMB gene identification and assess the current level of saturation, we updated the classical map, compared the physical and genetic locations of mapped loci, and performed allelism tests between mapped (but not cloned) and cloned (but not mapped) emb mutants with similar chromosome locations. Two hundred pairwise combinations of genes located on chromosomes 1 and 5 were tested and more than 1100 total crosses were screened. Sixteen of 51 mapped emb mutants examined were found to be disrupted in a known EMB gene. Alleles of a wide range of published EMB genes (YDA, GLA1, TIL1, AtASP38, AtDEK1, EMB506, DG1, OEP80) were discovered. Two EMS mutants isolated 30 years ago, T-DNA mutants with complex insertion sites, and a mutant with an atypical, embryo-specific phenotype were resolved. The frequency of allelism encountered was consistent with past estimates of 500 to 1000 EMB loci. New EMB genes identified among mapped T-DNA insertion mutants included CHC1, which is required for chromatin remodeling, and SHS1/AtBT1, which encodes a plastidial nucleotide transporter similar to the maize Brittle1 protein required for normal endosperm development. Two classical genetic markers (PY, ALB1) were identified based on similar map locations of known genes required for thiamine (THIC) and chlorophyll (PDE166) biosynthesis. The alignment of genetic and physical maps presented here should facilitate the continued analysis of essential genes in Arabidopsis and further characterization of a broad spectrum of mutant phenotypes in a model plant

A process calculus with finitary comprehended terms

We introduce the notion of an ACP process algebra and the notion of a meadow enriched ACP process algebra. The former notion originates from the models of the axiom system ACP. The latter notion is a simple generalization of the former notion to processes in which data are involved, the mathematical structure of data being a meadow. Moreover, for all associative operators from the signature of meadow enriched ACP process algebras that are not of an auxiliary nature, we introduce variable-binding operators as generalizations. These variable-binding operators, which give rise to comprehended terms, have the property that they can always be eliminated. Thus, we obtain a process calculus whose terms can be interpreted in all meadow enriched ACP process algebras. Use of the variable-binding operators can have a major impact on the size of terms.Comment: 25 pages, combined with arXiv:0901.3012 [math.RA]; presentation improved, mistakes in Table 5 correcte

Molecular Foundations of Reproductive Lethality in Arabidopsis thaliana

The SeedGenes database (www.seedgenes.org) contains information on more than 400 genes required for embryo development in Arabidopsis. Many of these EMBRYO-DEFECTIVE (EMB) genes encode proteins with an essential function required throughout the life cycle. This raises a fundamental question. Why does elimination of an essential gene in Arabidopsis often result in embryo lethality rather than gametophyte lethality? In other words, how do mutant (emb) gametophytes survive and participate in fertilization when an essential cellular function is disrupted? Furthermore, why do some mutant embryos proceed further in development than others? To address these questions, we first established a curated dataset of genes required for gametophyte development in Arabidopsis based on information extracted from the literature. This provided a basis for comparison with EMB genes obtained from the SeedGenes dataset. We also identified genes that exhibited both embryo and gametophyte defects when disrupted by a loss-of-function mutation. We then evaluated the relationship between mutant phenotype, gene redundancy, mutant allele strength, gene expression pattern, protein function, and intracellular protein localization to determine what factors influence the phenotypes of lethal mutants in Arabidopsis. After removing cases where continued development potentially resulted from gene redundancy or residual function of a weak mutant allele, we identified numerous examples of viable mutant (emb) gametophytes that required further explanation. We propose that the presence of gene products derived from transcription in diploid (heterozygous) sporocytes often enables mutant gametophytes to survive the loss of an essential gene in Arabidopsis. Whether gene disruption results in embryo or gametophyte lethality therefore depends in part on the ability of residual, parental gene products to support gametophyte development. We also highlight here 70 preglobular embryo mutants with a zygotic pattern of inheritance, which provide valuable insights into the maternal-to-zygotic transition in Arabidopsis and the timing of paternal gene activation during embryo development

Spatio-Temporal Model-Checking of Cyber-Physical Systems Using Graph Queries

We explore the application of graph database technology to spatio-temporal model checking of cooperating cyber-physical systems-of-systems such as vehicle platoons. We present a translation of spatio-temporal automata (STA) and the spatio-temporal logic STAL to semantically equivalent property graphs and graph queries respectively. We prove a sound reduction of the spatio-temporal verification problem to graph database query solving. The practicability and efficiency of this approach is evaluated by introducing NeoMC, a prototype implementation of our explicit model checking approach based on Neo4j. To evaluate NeoMC we consider case studies of verifying vehicle platooning models. Our evaluation demonstrates the effectiveness of our approach in terms of execution time and counterexample detection

Learning Moore Machines from Input-Output Traces

The problem of learning automata from example traces (but no equivalence or membership queries) is fundamental in automata learning theory and practice. In this paper we study this problem for finite state machines with inputs and outputs, and in particular for Moore machines. We develop three algorithms for solving this problem: (1) the PTAP algorithm, which transforms a set of input-output traces into an incomplete Moore machine and then completes the machine with self-loops; (2) the PRPNI algorithm, which uses the well-known RPNI algorithm for automata learning to learn a product of automata encoding a Moore machine; and (3) the MooreMI algorithm, which directly learns a Moore machine using PTAP extended with state merging. We prove that MooreMI has the fundamental identification in the limit property. We also compare the algorithms experimentally in terms of the size of the learned machine and several notions of accuracy, introduced in this paper. Finally, we compare with OSTIA, an algorithm that learns a more general class of transducers, and find that OSTIA generally does not learn a Moore machine, even when fed with a characteristic sample

Cropping systems strategy for effective management of Fusarium wilt in safflower

In many parts of India intensive cultivation of safflower on Vertisols appears to have aggravated the problem of Fusarium wilt in safflower due to the soil borne fungus, Fusarium oxysporum Schlecht f. sp. carthami Klisiwiez and Houstan (FOC). In a long-term field experiment at Patancheru, India, we evaluated four diverse dryland cropping systems that each included safflower for their effectiveness in controlling Fusarium wilt in safflower. Sorghum (rainy season crop) and safflower (post-rainy season crop) were grown every alternate year as a two-year rotation with: (1) sorghum intercropped with pigeonpea (S/PP − S + SF); (2) cowpea intercropped with pigeonpea (C/PP − S + SF); (3) sorghum followed by chickpea (S + CP − S + SF); (4) sorghum followed by safflower (S + SF − S + SF). Continuous sorghum and safflower (S + SF − S + SF) had higher Fusarium wilt incidence of fully wilted safflower plants (31%) and a larger build-up of Fusarium propagules (1728 cfu g−1 of soil) than other cropping systems. The inclusion of a legume such as chickpea in the rotation (S + CP − S + SF) reduced wilt incidence (7% fully wilted plants) and the level of inoculum in the soil to about 800 cfu g−1. There was a significant increase in safflower seed yield and biomass yield (883 and 1733 kg ha−1, respectively) in the S + CP − S + SF rotation compared with the S + SF − S + SF rotation (605 and 1323 kg ha−1, respectively). Nitrogen application at rates of 0 to 120 kg N ha−1 had no effect on wilt incidence in safflower, but increased seed and biomass yield significantly. Intercrop rotations (S/PP − S + SF and C/PP − S + SF) were less effective to manage the Fusarium wilt. The Area Under Disease Progress Curve (AUDPC) was almost 10 times higher in the S + SF − S + SF rotation (2842) compared with the S + CP − S + SF rotation (297). Wilt progress throughout the season in all four systems was linear, with significant differences in intercepts and rates of disease progress among cropping systems; the rate of disease progress was significantly greater in the S + SF − S + SF rotation compared with the other three systems, which were similar. There was also a strong linear relationship between wilt incidence and the number of Fusarium propagules in the soil; regressions had the same slope but different intercepts in each system. There was no relationship between wilt incidence and seed yield; nitrogen had the largest effect on yields. A break from safflower cultivation for one year in the post-rainy season by growing chickpea as a sequential crop after sorghum, or as an intercrop with pigeonpea and sorghum, combined with higher rates of nitrogen application to safflower appears to be an effective strategy for reducing Fusarium populations and sustaining safflower yield

Planar self-similar antennas for broadband millimeter-wave measurements

Self-similar antennas offer extremely broadband functionality and easily scalable designs. Self-similar designs with a four-arm layout are also suited for dual polarization through excitations of opposing arms, although there has only been limited use of them for millimeter-wave detectors. These antennas have been used for measurements of the cosmic microwave background (CMB), which encompass a wide frequency range and are now actively focusing more on polarization anisotropies. We analyze multiple planar self-similar antenna designs with simulations in high-frequency structure simulator and ongoing physical testing. They all exhibit broadband operation between 130 and 230 GHz and can couple to both linear polarizations through the previously mentioned four-arm symmetry. Simulations include each antenna design coupled to an extended hemispherical, AR-coated lenslet. From these, a basic bowtie-like arm design produced minimal polarization wobble with moderate beam efficiency, while a hybrid trapezoidal design provided high beam efficiency with small polarization wobble. Current fabrication versions of each are being tested, coupled to multichroic microwave kinetic inductance detectors. These planar self-similar antennas, when implemented in CMB and other detectors, could improve observations while simultaneously simplifying fabrication and detector layout

GP-support by means of AGnES-practice assistants and the use of telecare devices in a sparsely populated region in Northern Germany – proof of concept

<p>Abstract</p> <p>Background</p> <p>In many rural regions in Germany, the proportion of the elderly population increases rapidly. Simultaneously, about one-third of the presently active GPs will retire until 2010. Often it is difficult to find successors for vacant GP-practices. These regions require innovative concepts to avoid the imminent shortage in primary health care.</p> <p>The AGnES-concept comprises the delegation of GP-home visits to qualified AGnES-practice assistants (AGnES: GP-supporting, community-based, e-health-assisted, systemic intervention). Main objectives were the assessment of the acceptance of the AGnES-concept by the participating GPs, patients, and AGnES-practice assistants, the kind of delegated tasks, and the feasibility of home telecare in a GP-practice.</p> <p>Methods</p> <p>In this paper, we report first results of the implementation of this concept in regular GP-practices, conducted November 2005 – March 2007 on the Island of Rügen, Mecklenburg-Western Pomerania, Germany. This study was meant as a proof of concept.</p> <p>The GP delegated routine home-visits to qualified practice employees (here: registered nurses). Eligible patients were provided with telecare-devices to monitor disease-related physiological values.</p> <p>All delegated tasks, modules conducted and questionnaire responses were documented. The participating patients were asked for their acceptance based on standardized questionnaires. The GPs and AGnES-practice assistants were asked for their judgement about different project components, the quality of health care provision and the competences of the AGnES-practice assistants.</p> <p>Results</p> <p>550 home visits were conducted. 105 patients, two GPs and three AGnES-practice assistants (all registered nurses) participated in the project. 48 patients used telecare-devices to monitor health parameters. 87.4% of the patients accepted AGnES-care as comparable to common GP-care. In the course of the project, the GPs delegated an increasing number of both monitoring and interventional tasks to the AGnES-practice assistants. The GPs agreed that delegating tasks to a qualified practice assistant relieves them in their daily work.</p> <p>Conclusion</p> <p>A part of the GPs home visits can be delegated to AGnES-practice assistants to support GPs in regions with an imminent or already existing undersupply in primary care. The project triggered discussions among the institutions involved in the German healthcare system and supported a reconciliation of the respective competences of physicians and other medical professions.</p

An effective all-atom potential for proteins

We describe and test an implicit solvent all-atom potential for simulations of protein folding and aggregation. The potential is developed through studies of structural and thermodynamic properties of 17 peptides with diverse secondary structure. Results obtained using the final form of the potential are presented for all these peptides. The same model, with unchanged parameters, is furthermore applied to a heterodimeric coiled-coil system, a mixed alpha/beta protein and a three-helix-bundle protein, with very good results. The computational efficiency of the potential makes it possible to investigate the free-energy landscape of these 49--67-residue systems with high statistical accuracy, using only modest computational resources by today's standards