Remote sensing of near-infrared chlorophyll fluorescence from space in scattering atmospheres: implications for its retrieval and interferences with atmospheric CO_2 retrievals

With the advent of dedicated greenhouse gas space-borne spectrometers sporting high resolution spectra in the O_2 A-band spectral region (755–774 nm), the retrieval of chlorophyll fluorescence has become feasible on a global scale. If unaccounted for, however, fluorescence can indirectly perturb the greenhouse gas retrievals as it perturbs the oxygen absorption features. As atmospheric CO_2 measurements are used to invert net fluxes at the land–atmosphere interface, a bias caused by fluorescence can be crucial as it will spatially correlate with the fluxes to be inverted. Avoiding a bias and retrieving fluorescence accurately will provide additional constraints on both the net and gross fluxes in the global carbon cycle. We show that chlorophyll fluorescence, if neglected, systematically interferes with full-physics multi-band X_(CO_2) retrievals using the O_2 A-band. Systematic biases in X_(CO_2) can amount to +1 ppm if fluorescence constitutes 1% to the continuum level radiance. We show that this bias can be largely eliminated by simultaneously fitting fluorescence in a full-physics based retrieval. If fluorescence is the primary target, a dedicated but very simple retrieval based purely on Fraunhofer lines is shown to be more accurate and very robust even in the presence of large scattering optical depths. We find that about 80% of the surface fluorescence is retained at the top-of-atmosphere, even for cloud optical thicknesses around 2–5. We further show that small instrument modifications to future O_2 A-band spectrometer spectral ranges can result in largely reduced random errors in chlorophyll fluorescence, paving the way towards a more dedicated instrument exploiting solar absorption features only

Successful treatment of a solitary skull metastasis in a child with Wilms' Tumor

This report presents the successful treatment of a child with a solitary metastatic lesion to the calvarium following treatment for Stage III anaplastic Wilms’ Tumor

Inferring metabolic mechanisms of interaction within a defined gut microbiota

The diversity and number of species present within microbial communities create the potential for a multitude of interspecies metabolic interactions. Here, we develop, apply, and experimentally test a framework for inferring metabolic mechanisms associated with interspecies interactions. We perform pairwise growth and metabolome profiling of co-cultures of strains from a model mouse microbiota. We then apply our framework to dissect emergent metabolic behaviors that occur in co-culture. Based on one of the inferences from this framework, we identify and interrogate an amino acid cross-feeding interaction and validate that the proposed interaction leads to a growth benefit in vitro. Our results reveal the type and extent of emergent metabolic behavior in microbial communities composed of gut microbes. We focus on growth-modulating interactions, but the framework can be applied to interspecies interactions that modulate any phenotype of interest within microbial communities

Tropospheric sources and sinks of gas-phase acids in the Colorado Front Range

We measured organic and inorganic gas-phase acids in the Front Range of Colorado to better understand their tropospheric sources and sinks using a high-resolution time-of-flight chemical ionization mass spectrometer. Measurements were conducted from 4 to 13 August 2014 at the Boulder Atmospheric Observatory during the Front Range Air Pollution and Photochemistry Éxperiment. Diurnal increases in mixing ratios are consistent with photochemical sources of HNO3, HNCO, formic, propionic, butyric, valeric, and pyruvic acid. Vertical profiles taken on the 300&thinsp;m tower demonstrate net surface-level emissions of alkanoic acids, but net surface deposition of HNO3 and pyruvic acid. The surface-level alkanoic acid source persists through both day and night, and is thus not solely photochemical. Reactions between O3 and organic surfaces may contribute to the surface-level alkanoic acid source. Nearby traffic emissions and agricultural activity are a primary source of propionic, butyric, and valeric acids, and likely contribute photochemical precursors to HNO3 and HNCO. The combined diel and vertical profiles of the alkanoic acids and HNCO are inconsistent with dry deposition and photochemical losses being the only sinks, suggesting additional loss mechanisms.</p

Sources and Secondary Production of Organic Aerosols in the Northeastern United States during WINTER

Most intensive field studies investigating aerosols have been conducted in summer, and thus, wintertime aerosol sources and chemistry are comparatively poorly understood. An aerosol mass spectrometer was flown on the National Science Foundation/National Center for Atmospheric Research C‐130 during the Wintertime INvestigation of Transport, Emissions, and Reactivity (WINTER) 2015 campaign in the northeast United States. The fraction of boundary layer submicron aerosol that was organic aerosol (OA) was about a factor of 2 smaller than during a 2011 summertime study in a similar region. However, the OA measured in WINTER was almost as oxidized as OA measured in several other studies in warmer months of the year. Fifty‐eight percent of the OA was oxygenated (secondary), and 42% was primary (POA). Biomass burning OA (likely from residential heating) was ubiquitous and accounted for 33% of the OA mass. Using nonvolatile POA, one of two default secondary OA (SOA) formulations in GEOS‐Chem (v10‐01) shows very large underpredictions of SOA and O/C (5×) and overprediction of POA (2×). We strongly recommend against using that formulation in future studies. Semivolatile POA, an alternative default in GEOS‐Chem, or a simplified parameterization (SIMPLE) were closer to the observations, although still with substantial differences. A case study of urban outflow from metropolitan New York City showed a consistent amount and normalized rate of added OA mass (due to SOA formation) compared to summer studies, although proceeding more slowly due to lower OH concentrations. A box model and SIMPLE perform similarly for WINTER as for Los Angeles, with an underprediction at ages \u3c6 hr, suggesting that fast chemistry might be missing from the models

A Correlation Between the Ionization State of the Inner Accretion Disk and the Eddington Ratio of Active Galactic Nuclei

X-ray reflection features observed from the innermost regions of accretion disks in Active Galactic Nuclei (AGNs) allow important tests of accretion theory. In recent years it has been possible to use the Fe K line and reflection continuum to parametrize the ionization state of the irradiated inner accretion disk. Here, we collect 10 measurements of xi, the disk ionization parameter, from 8 AGNs with strong evidence for reflection from the inner accretion disk and good black hole mass estimates. We find strong statistical evidence (98.56% confidence) for a nearly linear correlation between xi and the AGN Eddington ratio. Moreover, such a correlation is predicted by a simple application of alpha-disk accretion theory, albeit with a stronger dependence on the Eddington ratio. The theory shows that there will be intrinsic scatter to any correlation as a result of different black hole spins and radii of reflection. There are several possibilities to soften the predicted dependence on the Eddington ratio to allow a closer agreement with the observed correlation, but the current data does not allow for an unique explanation. The correlation can be used to estimate that MCG-6-30-15 should have a highly ionized inner accretion disk, which would imply a black hole spin of ~0.8. Additional measurements of xi from a larger sample of AGNs are needed to confirm the existence of this correlation, and will allow investigation of the accretion disk/corona interaction in the inner regions of accretion disks.Comment: 21 pages, 2 figures, accepted by Ap