The subtropical recirculation of Mode Waters

A Mode Water is a particular type of water mass characterized by its vertical homogeneity. There are two general varieties in the world ocean: Subtropical Mode Waters and Subpolar Mode Waters. The vertical homogeneity of a Mode Water is acquired by the process of deep vertical convection in winter. The low vertical density gradient imparted to the water column by convection persists laterally as the general circulation carries the Mode Water away from the formation zone...

An example of long-term variability for subsurface current and hydrographic patterns in the western North Atlantic

An example of long-term variability along 55W, perhaps interannual, for current and temperature distributions during mid-1975-1977 is presented. The existence of significant energy in the 55W data set at time scales longer than mesoscale (50-150 days) has been clear for , some time, but this is a first description of the latitudinal and vertical configuration of this low-frequency variability...

Direct observations of the Antarctic Slope Current transport at 113°E

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016): 7390–7407, doi:10.1002/2015JC011594.The Antarctic Slope Current (ASC), defined here as the region of westward flow along the continental slope off Antarctica, forms the southern limb of the subpolar gyres. It regulates the exchange of water across the shelf break and provides a path for interbasin westward transport. Despite its significance, the ASC remains largely unobserved around most of the Antarctic continent. Here we present direct velocity observations from a 17 month current meter moored array deployed across the continental slope between the 1000 and the 4200 m isobaths, in the southeastern Indian Ocean near 113°E. The observed time-mean flow consists of a surface-intensified jet associated with the Antarctic Slope Front (ASF) and a broader bottom-intensified westward flow that extends out to approximately the 4000 m isobath and is strongest along the upper slope. The time-mean transport of the ASC is −29.2 Sv. Fluctuations in the transport are large, typically exceeding the mean by a factor of 2. They are mainly due to changes in the northward extent of the current over the lower slope. However, seasonal changes in the wind also drive variations in the transport of the ASF and the flow in the upper slope. Both mean and variability are largely barotropic, thus invisible to traditional geostrophic methodsM.S.M. and the current meter array were supported by the National Science Foundation grant 0727045 ‘‘Measuring Westward Recirculation in the Subpolar Gyre of the Southeastern Indian Ocean.’’ B.P.M. and S.R.R. were supported by the Cooperative Research Centre program of the Australian Government, through the Antarctic Climate and Ecosystems Cooperative Research Centre. S.R.R. was also supported by the Australian Government Department of the Environment, the Bureau of Meteorology and CSIRO through the Australian Climate Change Science Program.2017-04-1

Moored observations of the Deep Western Boundary Current in the NW Atlantic: 2004–2014

Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 7488–7505, doi:10.1002/2017JC012984.A moored array spanning the continental slope southeast of Cape Cod sampled the equatorward-flowing Deep Western Boundary Current (DWBC) for a 10 year period: May 2004 to May 2014. Daily profiles of subinertial velocity, temperature, salinity, and neutral density are constructed for each mooring site and cross-line DWBC transport time series are derived for specified water mass layers. Time-averaged transports based on daily estimates of the flow and density fields in Stream coordinates are contrasted with those derived from the Eulerian-mean flow field, modes of DWBC transport variability are investigated through compositing, and comparisons are made to transport estimates for other latitudes. Integrating the daily velocity estimates over the neutral density range of 27.8–28.125 kg/m3 (encompassing Labrador Sea and Overflow Water layers), a mean equatorward DWBC transport of 22.8 × 106 ± 1.9 × 106 m3/s is obtained. Notably, a statistically significant trend of decreasing equatorward transport is observed in several of the DWBC components as well as the current as a whole. The largest linear change (a 4% decrease per year) is seen in the layer of Labrador Sea Water that was renewed by deep convection in the early 1990s whose transport fell from 9.0 × 106 m3/s at the beginning of the field program to 5.8 × 106 m3/s at its end. The corresponding linear fit to the combined Labrador Sea and Overflow Water DWBC transport decreases from 26.4 × 106 to 19.1 × 106 m3/s. In contrast, no long-term trend is observed in upper ocean Slope Water transport. These trends are discussed in the context of decadal observations of the North Atlantic circulation, and subpolar air-sea interaction/water mass transformation.G. Unger Vetlesen Foundation; Woods Hole Oceanographic Institution; US National Science Foundation2018-03-1

Modulation of synaptic function by VAC14, a protein that regulates the phosphoinositides PI(3,5)P 2 and PI(5)P

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/102191/1/embj2012200.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/102191/2/embj2012200-sup-0001.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/102191/3/embj2012200-reviewer_comments.pd

Trans-equatorial bottom water flow in the western Atlantic : volume XLVI in a series of reports presenting data from moored current meters

Current and temperature measurements from Vector Averaging Current Meters (VACMs) deployed from September 1992 to June 1994 as part of the Deep Basin Experiment (DBE) measuring the trans-equatorial water flow are presented. Salinity and temperature measurements from Conductivity/Temperature/Depth (CTD) casts taken during the mooring deployment and recovery cruises are also presented. Six mooring sites were occupied with a total of 24 vector averaging current meters and 4 Aanderaa current meters. Three nominal depths (3900, 4100 and 4300 m.) were occupied on each mooring. Three of the 6 moorings had current meters at additional depths. Basic data from the vector averaging current meters are presented both in statistical tables and graphically as histograms, scatter plots, progressive vector diagrams and spectral diagrams. One day Gaussian filtered plots are shown in composite displays of variables versus time. Temperature and salinity profies and e/s plots for 22 CTD stations are presented.Funding was provided by the National Science Foundation through Grant No. OCE-9105834

Freshwater export from the Labrador Current to the North Atlantic Current at the Tail of the Grand Banks of Newfoundland

Author Posting. © The Author(s), 2009. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 57 (2010): 258-283, doi:10.1016/j.dsr.2009.11.006.Historical hydrographic data, spanning the period 1896-2006, are used to examine the annual mean and seasonal variations in the distribution of freshwater along and across the shelf/slope boundary along the Labrador and Newfoundland Shelves and the Grand Banks of Newfoundland. Particular attention is paid to the export of freshwater along the eastern Grand Banks, between Flemish Cap and the Tail of the Grand Banks, as this has long been identified as a preferential region for the loss of mass and freshwater from the boundary. The data are combined into isopycnally averaged long-term annual and monthly mean gridded property fields and the evolving distribution of fresh arctic-origin water is analyzed in fields of salinity anomaly, expressed as departures from the “central water” temperature-salinity relation of the Gulf Stream. The climatology confirms that cold/fresh northern-source waters are advected offshore within the retroflecting Labrador Current along the full length of the boundary between Flemish Cap and the Tail of the Grand Banks. In fact, it is estimated that most of the equatorward baroclinic transport at the boundary must retroflect back toward the north in order to explain the annual mean distribution of salinity in the climatology. While the retroflection of the Labrador Current appears seasonally robust, the freshwater distribution within the retroflection region varies in response to (1) the freshness of the water available for export which is set by the arrival and rapid flushing of the seasonal freshwater pulse at the boundary, (2) seasonal buoyancy forcing at the surface which alters the vertical stratification across the retroflection region, restricting certain isopycnal export pathways, and (3) the density structure along the eastern Grand Banks, which defines the progressive retroflection of the Labrador Current.This work was supported by a grant from the Woods Hole Oceanographic Institution’s Ocean and Climate Change Institute (PF) and by the National Science Foundation under grant OCE-0550423 (PF and MM)

Observations of the Antarctic polar front during FDRAKE 76 : a cruise report

Figures 37 and 38 have been reduced from their original size for the purpose of scanning.During March/April 1976 the small-scale structure of the Antarctic Polar Front was observed in the Drake Passage. The observations were part of the International Southern Ocean Studies (ISOS) program called FDRAke 76. The purpose of the program was to obtain densely sampled measurements of temperature, salinity, dissolved oxygen, and chemical nutrients in the Polar Front Zone (PFZ) and pilot measurements of horizontal and vertical velocities in order to explain the above scalar variability. The PFZ is a region where Antarctic and sub-Antarctic waters intermingle and presumably mix to affect the properties of Antarctic Intermediate Water. A report on the third leg of Cruise 107 of the R. V. THOMPSON is presented as well as a description of the measurements and a preliminary report of the data. A feature of interest is the pinching off of a northward meander of the circumpolar current system into a cyclonic ring of Antarctic Waters.Prepared for the National Science Foundation, Office for the International Decade of Ocean Exploration, under Grant OCE75-14056 and the International Southern Ocean Studies (ISOS) Program

The antiviral protein viperin inhibits HCV replication via interaction with NS5A

The interferon-stimulated gene viperin has been shown to have antiviral activity against hepatitis C virus (HCV) in the context of the HCV replicon, although the molecular mechanisms responsible are not well understood. Here we demonstrate that viperin plays an integral part in the ability of interferon to limit replication of cell culture derived HCV (JFH-1) that accurately reflects the complete viral life cycle. Using confocal microscopy and Fluorescence Resonance Energy Transfer (FRET) analysis we demonstrate that viperin localizes and interacts with HCV NS5A at the lipid droplet interface. In addition viperin also associates with NS5A and the pro-viral cellular factor, VAP-A at the HCV replication complex. The ability of viperin to limit HCV replication was dependent on residues within the C-terminus as well as an N-terminal amphipathic helix. Removal of the amphipathic helix redirected viperin from the cytosolic face of the ER and the lipid droplet to a homogenous cytoplasmic distribution, coinciding with a loss of antiviral effect. C-terminal viperin mutants still localized to the lipid droplet interface and replication complexes but did not interact with NS5A proteins as determined by FRET analysis. In conclusion we propose that viperin interacts with NS5A and the host factor VAP-A to limit HCV replication at the replication complex. This highlights the complexity of host control of viral replication by interferon stimulated gene expression

Disruption of TGF-β Signaling Improves Ocular Surface Epithelial Disease in Experimental Autoimmune Keratoconjunctivitis Sicca

TGF-β is a pleiotropic cytokine that can have pro- or anti-inflammatory effects depending on the context. Elevated levels of bioactive TGF-β1 in tears and elevated TGF-β1mRNA transcripts in conjunctiva and minor salivary glands of human Sjögren's Syndrome patients has also been reported. The purpose of this study was to evaluate the response to desiccating stress (DS), an experimental model of dry eye, in dominant-negative TGF-β type II receptor (CD4-DNTGFβRII) mice. These mice have a truncated TGF-β receptor in CD4(+) T cells, rendering them unresponsive to TGF-β.DS was induced by subcutaneous injection of scopolamine and exposure to a drafty low humidity environment in CD4-DNTGFβRII and wild-type (WT) mice, aged 14 weeks, for 5 days. Nonstressed (NS) mice served as controls. Parameters of ocular surface disease included corneal smoothness, corneal barrier function and conjunctival goblet cell density. NS CD4-DNTGFβRII at 14 weeks of age mice exhibited a spontaneous dry eye phenotype; however, DS improved their corneal barrier function and corneal surface irregularity, increased their number of PAS+ GC, and lowered CD4(+) T cell infiltration in conjunctiva. In contrast to WT, CD4-DNTGFβRII mice did not generate a Th-17 and Th-1 response, and they failed to upregulate MMP-9, IL-23, IL-17A, RORγT, IFN-γ and T-bet mRNA transcripts in conjunctiva. RAG1KO recipients of adoptively transferred CD4+T cells isolated from DS5 CD4-DNTGFβRII showed milder dry eye phenotype and less conjunctival inflammation than recipients of WT control.Our results showed that disruption of TGF-β signaling in CD4(+) T cells causes paradoxical improvement of dry eye disease in mice subjected to desiccating stress