Results of the pseudo-curation procedure on 200 evenly distributed samples across the top100k

<p><b>Copyright information:</b></p><p>Taken from "Text-mining assisted regulatory annotation"</p><p>http://genomebiology.com/2008/9/2/R31</p><p>Genome Biology 2008;9(2):R31-R31.</p><p>Published online 13 Feb 2008</p><p>PMCID:PMC2374703.</p><p></p

Transcriptional regulatory sub-network around the transcription factor

All nodes and edges were retrieved from -related publications in the top100k abstract list. Black edges are success papers (that is, fully curatable publications); grey edges are failure papers that report regulatory data (for example, consensus sites) but are not the primary reference; grey dashed edges are failure papers that contain regulatory data that are not complete enough to allow full curation; blue edges are failures that report protein-protein interactions.<p><b>Copyright information:</b></p><p>Taken from "Text-mining assisted regulatory annotation"</p><p>http://genomebiology.com/2008/9/2/R31</p><p>Genome Biology 2008;9(2):R31-R31.</p><p>Published online 13 Feb 2008</p><p>PMCID:PMC2374703.</p><p></p

Comparison of automatically extracted text-based annotation and manual annotation of the gene regions

The region. The region. The 'evaluation' track refers to text-based hits extracted from papers with curated regulatory data in ORegAnno; the 'prediction' track refers to text hits extracted from papers not currently curated in ORegAnno, but with high predicted -regulatory content. Annotations in both text-based tracks are labeled with their corresponding PMIDs. Also shown are the original manual annotation in the FlyReg database, the automated mapping of these curated data in ORegAnno, and FlyBase genes, including the noncoding RNA gene that is expressed in response to heat shock. Differences in the FlyReg and ORegAnno mappings in (a) arise because the sequences for these regions are duplicated in the genome and alternative unique mappings are chosen in the two databases.<p><b>Copyright information:</b></p><p>Taken from "Text-mining assisted regulatory annotation"</p><p>http://genomebiology.com/2008/9/2/R31</p><p>Genome Biology 2008;9(2):R31-R31.</p><p>Published online 13 Feb 2008</p><p>PMCID:PMC2374703.</p><p></p

Additional file 3: Figure S1. of Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR

Overlap of off-target detection for the EMX1 and VEGFA guides tested by different assays. Off-targets are only shown if they were detected by at least a single study and with a frequency of 0.1 %. See Additional file 1: Tables S1 and Additional file 4: Table S2 for the modification frequencies and additional details on the off-targets for the guides EMX1 and VEGFA, respectively. Additional file 4: Table S2 also includes the data by Hsu et al. [7], who quantified cleavage at putative off-target loci predicted by the CRISPR Design website ( http://crispr.mit.edu/ ) with targeted deep sequencing, Tsai et al. [3], who isolated double-strand breaks with modified oligonucleotides followed by sequencing, Frock et al. [28], who detected translocations, and Kim et al. [33] and Kim et al. [27], who performed whole-genome sequencing to find CRISPR-induced modifications. For details on the different studies, see Additional file 1: Table S1. (PDF 17 kb

Acanthopanax trichodon Franch. et Savat.

原著和名: ミヤマウコギ科名: ウコギ科 = Araliaceae採集地: 千葉県 清澄山 (上総〜安房 清澄山)採集日: 1961/6/18採集者: 萩庭丈壽整理番号: JH042319国立科学博物館整理番号: TNS-VS-99231

Ilex serrata Thunb.

原著和名: ウメモドキ科名: モチノキ科 = Aquifoliaceae採集地: 愛知県 豊橋市 岩崎町 (三河 豊橋市 岩崎)採集日: 1968/10/20採集者: 萩庭丈壽整理番号: JH042317国立科学博物館整理番号: TNS-VS-99231

Mentha viridis L.

原著和名: ミドリハクカ科名: シソ科 = Labiatae採集地: 千葉県 千葉市 千葉大学 (下総 千葉市 千葉大学)採集日: 1967/8/13採集者: 萩庭丈壽整理番号: JH042898国立科学博物館整理番号: TNS-VS-99289