Deep Experimental Profiling of microRNA Diversity, Deployment, and Evolution Across the \u3ci\u3eDrosophila\u3c/i\u3e Genus

To assess miRNA evolution across the Drosophila genus, we analyzed several billion small RNA reads across 12 fruit fly species. These data permit comprehensive curation of species- and clade-specific variation in miRNA identity, abundance, and processing. Among well-conserved miRNAs, we observed unexpected cases of clade-specific variation in 5′ end precision, occasional antisense loci, and putatively noncanonical loci. We also used strict criteria to identify a large set (649) of novel, evolutionarily restricted miRNAs. Within the bulk collection of species-restricted miRNAs, two notable subpopulations are splicing-derived mirtrons and testes-restricted, recently evolved, clustered (TRC) canonical miRNAs. We quantified miRNA birth and death using our annotation and a phylogenetic model for estimating rates of miRNA turnover. We observed striking differences in birth and death rates across miRNA classes defined by biogenesis pathway, genomic clustering, and tissue restriction, and even identified flux heterogeneity among Drosophila clades. In particular, distinct molecular rationales underlie the distinct evolutionary behavior of different miRNA classes. Mirtrons are associated with high rates of 3′ untemplated addition, a mechanism that impedes their biogenesis, whereas TRC miRNAs appear to evolve under positive selection. Altogether, these data reveal miRNA diversity among Drosophila species and principles underlying their emergence and evolution

Deep Experimental Profiling of MicroRNA Diversity, Deployment, and Evolution Across the \u3ci\u3eDrosphila\u3c/i\u3e Genus

To assess miRNA evolution across the Drosophila genus, we analyzed several billion small RNA reads across 12 fruit fly species. These data permit comprehensive curation of species- and clade-specific variation in miRNA identity, abundance, and processing. Among well-conserved miRNAs, we observed unexpected cases of clade-specific variation in 5′ end precision, occasional antisense loci, and putatively noncanonical loci. We also used strict criteria to identify a large set (649) of novel, evolutionarily restricted miRNAs. Within the bulk collection of species-restricted miRNAs, two notable subpopulations are splicing-derived mirtrons and testes-restricted, recently evolved, clustered (TRC) canonical miRNAs. We quantified miRNA birth and death using our annotation and a phylogenetic model for estimating rates of miRNA turnover. We observed striking differences in birth and death rates across miRNA classes defined by biogenesis pathway, genomic clustering, and tissue restriction, and even identified flux heterogeneity among Drosophila clades. In particular, distinct molecular rationales underlie the distinct evolutionary behavior of different miRNA classes. Mirtrons are associated with high rates of 3′ untemplated addition, a mechanism that impedes their biogenesis, whereas TRC miRNAs appear to evolve under positive selection. Altogether, these data reveal miRNA diversity among Drosophila species and principles underlying their emergence and evolution

New eriophyoid mites from Italy. IV. Mites associated with weed plants

Geographical surveys of plant feeders on weeds are essential for finding species which can be studied as classical biological control agents of alien plants. Four eriophyoid species have been collected on well-known weeds surveyed on the Italian territory. A new species, Aceria verbenacae sp. nov., was found on leaf and stem deformations of Salvia verbenaca L. (Lamiaceae) and is described and illustrated. Two Phyllocoptinae species were found for the first time in Italy: Aculus mosoniensis (Ripka & Ã\u89rsek) comb. nov. and Metaculus rapistri Carmona. Aculus mosoniensis was collected on leaf deformations of Ailanthus altissima (Mill.) Swingle (Simaroubaceae), whereas M. rapistri was collected on leaf and stem deformations of Isatis tinctoria L. (Brassicaceae). Finally, Aceria drabae (Nalepa) was found on deformed leaves and stems of Lepidium draba L. (Brassicaceae) in central Italy. Its previous record in Friuli Venezia Giulia was based only on symptoms observed on the host plants. Three last species are described and illustrated in details to allow morphological comparisons along with previous reports

Erratum: Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus.

In the above-mentioned article, one of the coauthor names was misspelled and has now been corrected online as Md Mosharrof Hossain Mondal