Phase Transitions in Isolated Vortex Chains

In very anisotropic layered superconductors (e.g. Bi$_2$Sr$_2$CaCu$_2$O$_x$) a tilted magnetic field can penetrate as two co-existing lattices of vortices parallel and perpendicular to the layers. At low out-of-plane fields the perpendicular vortices form a set of isolated vortex chains, which have recently been observed in detail with scanning Hall-probe measurements. We present calculations that show a very delicate stability of this isolated-chain state. As the vortex density increases along the chain there is a first-order transition to a buckled chain, and then the chain will expel vortices in a continuous transition to a composite-chain state. At low densities there is an instability towards clustering, due to a long-range attraction between the vortices on the chain, and at very low densities it becomes energetically favorable to form a tilted chain, which may explain the sudden disappearance of vortices along the chains seen in recent experiments.Comment: 9 pages, 10 figure

Vortex Collisions: Crossing or Recombination?

We investigate the collision of two vortex lines moving with viscous dynamics and driven towards each other by an applied current. Using London theory in the approach phase we observe a non-trivial vortex conformation producing anti-parallel segments; their attractive interaction triggers a violent collision. The collision region is analyzed using the time-dependent Ginzburg-Landau equation. While we find vortices will always recombine through exchange of segments, a crossing channel appears naturally through a double collision process.Comment: 4 pages, 3 figure

Characteristics of First-Order Vortex Lattice Melting: Jumps in Entropy and Magnetization

We derive expressions for the jumps in entropy and magnetization characterizing the first-order melting transition of a flux line lattice. In our analysis we account for the temperature dependence of the Landau parameters and make use of the proper shape of the melting line as determined by the relative importance of electromagnetic and Josephson interactions. The results agree well with experiments on anisotropic Y$_1$Ba$_2$Cu$_3$O$_{7-\delta}$ and layered Bi$_2$Sr$_2$Ca$_1$Cu$_2$O$_8$ materials and reaffirm the validity of the London model.Comment: 4 pages. We have restructured the paper to emphasize that in the London scaling regime (appropriate for YBCO) our results are essentially exact. We have also emphasized that a major controversy over the relevance of the London model to describe VL melting has been settled by this wor

Vortex Chains in Anisotropic Superconductors

High-T_c superconductors in small magnetic fields directed away from the crystal symmetry axes have been found to exhibit inhomogeneous chains of flux lines (vortices), in contrast to the usual regular triangular flux-line lattice. We review the experimental observations of these chains, and summarize the theoretical background that explains their appearance. We treat separately two classes of chains: those that appear in superconductors with moderate anisotropy due to an attractive part of the interaction between tilted flux lines, and those with high anisotropy where the tilted magnetic flux is created by two independent and perpendicular crossing lattices. In the second case it is the indirect attraction between a flux line along the layers (Josephson vortex) and a flux line perpendicular to the layers (pancake vortex stack) that leads to the formation of chains of the pancake vortex stacks. This complex system contains a rich variety of phenomena, with several different equilibrium phases, and an extraordinary dynamic interplay between the two sets of crossing vortices. We compare the theoretical predictions of these phenomena with the experimental observations made to date. We also contrast the different techniques used to make these observations. While it is clear that this system forms a wonderful playground for probing the formation of structures with competing interactions, we conclude that there are important practical implications of the vortex chains that appear in highly anisotropic superconductors.Comment: Topical review for Journal of Physics: Condensed Matter; large pdf file 1.9M

Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne bla KPC Carbapenemase in Enterobacterales in the United Kingdom from 2009 to 2014.

Carbapenem resistance in Enterobacterales is a public health threat. Klebsiella pneumoniae carbapenemase (encoded by alleles of the bla KPC family) is one of the most common transmissible carbapenem resistance mechanisms worldwide. The dissemination of bla KPC historically has been associated with distinct K. pneumoniae lineages (clonal group 258 [CG258]), a particular plasmid family (pKpQIL), and a composite transposon (Tn4401). In the United Kingdom, bla KPC has represented a large-scale, persistent management challenge for some hospitals, particularly in North West England. The dissemination of bla KPC has evolved to be polyclonal and polyspecies, but the genetic mechanisms underpinning this evolution have not been elucidated in detail; this study used short-read whole-genome sequencing of 604 bla KPC-positive isolates (Illumina) and long-read assembly (PacBio)/polishing (Illumina) of 21 isolates for characterization. We observed the dissemination of bla KPC (predominantly bla KPC-2; 573/604 [95%] isolates) across eight species and more than 100 known sequence types. Although there was some variation at the transposon level (mostly Tn4401a, 584/604 [97%] isolates; predominantly with ATTGA-ATTGA target site duplications, 465/604 [77%] isolates), bla KPC spread appears to have been supported by highly fluid, modular exchange of larger genetic segments among plasmid populations dominated by IncFIB (580/604 isolates), IncFII (545/604 isolates), and IncR (252/604 isolates) replicons. The subset of reconstructed plasmid sequences (21 isolates, 77 plasmids) also highlighted modular exchange among non-bla KPC and bla KPC plasmids and the common presence of multiple replicons within bla KPC plasmid structures (>60%). The substantial genomic plasticity observed has important implications for our understanding of the epidemiology of transmissible carbapenem resistance in Enterobacterales for the implementation of adequate surveillance approaches and for control

Erratum: Corrigendum: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

International Chicken Genome Sequencing Consortium. The Original Article was published on 09 December 2004. Nature432, 695–716 (2004). In Table 5 of this Article, the last four values listed in the ‘Copy number’ column were incorrect. These should be: LTR elements, 30,000; DNA transposons, 20,000; simple repeats, 140,000; and satellites, 4,000. These errors do not affect any of the conclusions in our paper. Additional information. The online version of the original article can be found at 10.1038/nature0315