Selkoe Supplementary data R-2

Datasets S1-S7 accompanying Selkoe et al. 2016 ProcB http://dx.doi.org/10.1098/rspb.2016.035

ToBoLab Hawaii reef genetic data files Arlequin format

Each file is named with the first three letters of the genus and species names followed by a two letter marker abbreviation, the number of loci when more than one, and the last name of the original data owner. In each file, island sampling locations are indicated by the first four letters of the island name. For files using a HaplotypeDefinition List, formatting changes to this section may be needed to successfully load into Arlequin. Use PGDSpider software to reformat files to a different input format. Please contact data owners before use of these datasets to obtain detailed information about sampling and study design for proper interpretation of findings. See Appendix in the Supplementary materials of the study for full names and addresses of data owner

Map of study area showing gillnet prohibited area (hatched area) in Kailua Bay and open area in Waimanalo Bay (A) on the island of O‘ahu in Hawai‘i (B).

<p>Red circles show sampling locations, and depth contours are colored from light (shallow) to dark (deep).</p

Results of general linear mixed models of catch per unit effort (CPUE) for (A) jacks, (B) bonefishes, (C) flagtails, and (D) Pacific threadfin following a Before-After-Control-Impact (BACI) design to measure differences in juvenile fish populations between a protected area (Kailua) and an unprotected area (Waimānalo), before and after a gillnet closure in Hawai‘i (error bars ± 1 SE).

<p>Results of general linear mixed models of catch per unit effort (CPUE) for (A) jacks, (B) bonefishes, (C) flagtails, and (D) Pacific threadfin following a Before-After-Control-Impact (BACI) design to measure differences in juvenile fish populations between a protected area (Kailua) and an unprotected area (Waimānalo), before and after a gillnet closure in Hawai‘i (error bars ± 1 SE).</p

Trend component of decomposed time series of catch per unit effort (CPUE) at two locations, Kailua (blue) and Waimānalo (black), for (A) all species combined, (B) jacks, (C) bonefishes, (D) flagtails, and (E) Pacific threadfin.

<p>Vertical line represents gillnet ban in Kailua in 2007</p

Length frequency distribution for (A) jacks, (B) bonefishes, (C) flagtails, and (D) Pacific threadfin between a protected area (Kailua—light grey) and an unprotected area (Waimānalo—dark grey).

<p>Vertical arrows correspond to mean length at each site.</p

Results of general linear mixed models of catch per unit effort (CPUE) for all species combined and for individual species following a Before-After-Control-Impact (BACI) design to measure differences in juvenile fish populations between a protected and an unprotected area, before and after a gillnet closure in Hawai‘i.

<p>Results of general linear mixed models of catch per unit effort (CPUE) for all species combined and for individual species following a Before-After-Control-Impact (BACI) design to measure differences in juvenile fish populations between a protected and an unprotected area, before and after a gillnet closure in Hawai‘i.</p

Commercial landings of bonefishes from 1900, and 1965–2011 for the island of O‘ahu.

<p>Vertical line represents gillnet ban in Kailua in 2007. Data from 1903 from [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0155221#pone.0155221.ref055" target="_blank">55</a>], and otherwise from Hawai‘i Division of Aquatic Resources.</p

Primary anthropogenic drivers.

<p>Distributions of primary proximate anthropogenic drivers by island for the main Hawaiian Islands ordered from north to south. Box plots represent minimum, 1^st quartile, mean, 3^rd quartile, and maximum for each continuous driver, and categorical drivers (i.e. presence) are histograms of frequency of occurrence. Drivers include (A) total commercial catch for all gears combined (kg/ha), (B) total non-commercial catch for all gears combined (kg/ha), (C) sediment (Tons/yr/ha), (D) nitrogen flux from OSDS (g/day/km²), (E) invasive fish, (F) invasive algae, (G) habitat modification (proportion of reef area with presence), (H) new development (unitless).</p

Environmental drivers.

<p>Spatial distributions in key environmental drivers that influence coral reef ecosystems, including chlorophyll-<i>a</i> (mg m^-3), sea surface temperature (°C), wave power (kW m^-1), and irradiance (Einstein m^-2 d-¹) across the eight main Hawaiian Islands.</p