Level set segmentation of bovine corpora lutea in ex situ ovarian ultrasound images

<p>Abstract</p> <p>Background</p> <p>The objective of this study was to investigate the viability of level set image segmentation methods for the detection of corpora lutea (corpus luteum, CL) boundaries in ultrasonographic ovarian images. It was hypothesized that bovine CL boundaries could be located within 1–2 mm by a level set image segmentation methodology.</p> <p>Methods</p> <p>Level set methods embed a 2D contour in a 3D surface and evolve that surface over time according to an image-dependent speed function. A speed function suitable for segmentation of CL's in ovarian ultrasound images was developed. An initial contour was manually placed and contour evolution was allowed to proceed until the rate of change of the area was sufficiently small. The method was tested on ovarian ultrasonographic images (<it>n </it>= 8) obtained <it>ex situ</it>. A expert in ovarian ultrasound interpretation delineated CL boundaries manually to serve as a "ground truth". Accuracy of the level set segmentation algorithm was determined by comparing semi-automatically determined contours with ground truth contours using the mean absolute difference (MAD), root mean squared difference (RMSD), Hausdorff distance (HD), sensitivity, and specificity metrics.</p> <p>Results and discussion</p> <p>The mean MAD was 0.87 mm (sigma = 0.36 mm), RMSD was 1.1 mm (sigma = 0.47 mm), and HD was 3.4 mm (sigma = 2.0 mm) indicating that, on average, boundaries were accurate within 1–2 mm, however, deviations in excess of 3 mm from the ground truth were observed indicating under- or over-expansion of the contour. Mean sensitivity and specificity were 0.814 (sigma = 0.171) and 0.990 (sigma = 0.00786), respectively, indicating that CLs were consistently undersegmented but rarely did the contour interior include pixels that were judged by the human expert not to be part of the CL. It was observed that in localities where gradient magnitudes within the CL were strong due to high contrast speckle, contour expansion stopped too early.</p> <p>Conclusion</p> <p>The hypothesis that level set segmentation can be accurate to within 1–2 mm on average was supported, although there can be some greater deviation. The method was robust to boundary leakage as evidenced by the high specificity. It was concluded that the technique is promising and that a suitable data set of human ovarian images should be obtained to conduct further studies.</p

Risk Assessment of Erosion from Concentrated Flow on Rangelands Using Overland Flow Distribution and Shear Stress Partitioning

Erosion rates of overland flow on rangelands tend to be relatively low, but under certain conditions where flow is concentrated, soil loss can be significant. Therefore, a rangeland site can be highly vulnerable to soil erosion where overland flow is likely to concentrate and exert high shear stress on soil grains. This concept is commonly applied in cropland and wildland soil erosion modeling using predictions of flow effective shear stress (shear stress applied on soil grains). However, historical approaches to partition shear stress in erosion models are computationally complex and require extensive parameterization. Furthermore, most models are not capable of predicting the conditions in which concentrated flow occurs on rangelands. In this study, we investigated the rangelands conditions at which overland flow is more likely to become concentrated and developed equations for partitioning the shear stress of concentrated flow on rangelands. A logistic equation was developed to estimate the probability of overland flow to become concentrated. Total shear stress of rangeland overland flow was partitioned into components exerted on soil, vegetation, and rock cover using field experimental data. In addition, we investigated the vegetation cover limit at which the effective shear stress component is substantially reduced, limiting the erosion rate. The results from the partitioning equations show that shear stress exerted on soil grains was relatively small in sheet flow. Shear stress exerted on soil grains in concentrated flow was significantly higher when bare soil exceeded 60% of the total surface area but decreased significantly when the bare soil area was less than 25% or when the plant base cover exceeded 20%. These percentages could be used as relative measures of hydrologic recovery for disturbed rangelands or as triggers that indicate a site is crossing a threshold beyond which soil erosion might accelerate due to the high effective shear stress

Concentrated Flow Erodibility for Physically Based Erosion Models: Temporal Variability in Disturbed and Undisturbed Rangelands

Current physically based overland flow erosion models for rangeland application do not separate disturbed and undisturbed conditions in modeling concentrated flow erosion. In this study, concentrated flow simulations on disturbed and undisturbed rangelands were used to estimate the erodibility and to evaluate the performance of linear and power law equations that describe the relationship between erosion rate and several hydraulic parameters. None of the hydraulic parameters consistently predicted the detachment capacity well for all sites, however, stream power performed better than most of other hydraulic parameters. Using power law functions did not improve the detachment relation with respect to that of the linear function. Concentrated flow erodibility increased significantly when a site was exposed to a disturbance such as fire or tree encroachment into sagebrush steppe. This study showed that burning increases erosion by amplifying the erosive power of overland flow through removing obstacles and by changing the soil properties affecting erodibility itself. However, the magnitude of fire impact varied among sites due to inherent differences in site characteristics and variability in burn severity. In most cases we observed concentrated flow erodibility had a high value at overland flow initiation and then started to decline with time due to reduction of sediment availability. Thus we developed an empirical function to predict erodibility variation within a runoff event as a function of cumulative unit discharge. Empirical equations were also developed to predict erodibility variation with time postdisturbance as a function of readily available vegetation cover and surface soil texture data

Thoracic transplantation

Note on Sources: The articles in this supplement are based on the reference tables in the 2002 OPTN/SRTR Annual Report, which are not included in this publication. Many relevant data appear in figures and tables directly referred to in the article; other tables from the Annual Report that serve as the basis for this article include the following: Tables 1.5, 1.6, 1.12, 1.13, 11.1–11.4, 11.8, 11.9, 12.1–12.4, 12.7–12.9, 13.1–13.4, and 13.7–13.9. All of these tables are also available online at http://www.ustransplant.org.The Scientific Registry of Transplant Recipients (SRTR) is funded by contract #231-00-0116 from the Health Resources and Services Administration (HRSA). The views expressed herein are those of the authors and not necessarily those of the US Government. This is a US Government-funded work. There are no restrictions on its use.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/91976/1/2003 AJT Thoracic Transplantation.pd

Novel pathogenic COX20 variants causing dysarthria, ataxia, and sensory neuropathy.

COX20/FAM36A encodes a mitochondrial complex IV assembly factor important for COX2 activation. Only one homozygous COX20 missense mutation has been previously described in two separate consanguineous families. We report four subjects with features that include childhood hypotonia, areflexia, ataxia, dysarthria, dystonia, and sensory neuropathy. Exome sequencing in all four subjects identified the same novel COX20 variants. One variant affected the splice donor site of intron-one (c.41A&gt;G), while the other variant (c.157+3G&gt;C) affected the splice donor site of intron-two. cDNA and protein analysis indicated that no full-length cDNA or protein was generated. These subjects expand the phenotype associated with COX20 deficiency

Dynamic scaling for 2D superconductors, Josephson junction arrays and superfluids

The value of the dynamic critical exponent $z$ is studied for two-dimensional superconducting, superfluid, and Josephson Junction array systems in zero magnetic field via the Fisher-Fisher-Huse dynamic scaling. We find $z\simeq5.6\pm0.3$, a relatively large value indicative of non-diffusive dynamics. Universality of the scaling function is tested and confirmed for the thinnest samples. We discuss the validity of the dynamic scaling analysis as well as the previous studies of the Kosterlitz-Thouless-Berezinskii transition in these systems, the results of which seem to be consistent with simple diffusion ($z=2$). Further studies are discussed and encouraged.Comment: 19 pages in two-column RevTex, 8 embedded EPS figure

Varicella Zoster Virus in Saliva of Patients With Herpes Zoster

Background. VZV DNA is present in saliva of healthy astronauts and patients with Ramsay Hunt syndrome (geniculate zoster). We hypothesized that a prospective analysis of patients with zoster would detect VZV in saliva independent of zoster location. Methods. We treated 54 patients with valacyclovir. On the first treatment day, 7- and 14-days later, pain was scored and saliva examined for VZV DNA. Saliva from six subjects with chronic pain and 14 healthy subjects was similarly studied. Results. Follow-up data was available for 50/54 patients. Pain decreased in 43/50 (86 percent), disappeared in 37 (74 percent), recurred after disappearing in three (6 percent) and increased in four (8 percent). VZV DNA was found in every patient the day treatment was started, decreased in 47/50 (94 percent), transiently increased in three (6 percent) before decreasing, increased in two (4 percent) and disappeared in 41 (82 percent). There was a positive correlation between the presence of VZV DNA and pain, as well as between the VZV DNA copy number and pain (P<0.0005). Saliva of two patients was cultured, and infectious VZV was isolated from one. VZV DNA was present in one patient before rash and in four patients after pain resolved, and not in any control subjects. Conclusion. VZV DNA is present in saliva of zoster patients

Salivary Markers: The Effects of Long-Duration Spaceflight on Salivary and Blood Markers of Innate Immunity

No abstract availabl

Incorporating Hydrologic Data and Ecohydrologic Relationships into Ecological Site Descriptions

The purpose of this paper is to recommend a framework and methodology for incorporating hydrologic data and ecohydrologic relationships in Ecological Site Descriptions (ESDs) and thereby enhance the utility of ESDs for assessing rangelands and guiding resilience-based management strategies. Resilience-based strategies assess and manage ecological state dynamics that affect state vulnerability and, therefore, provide opportunities to adapt management. Many rangelands are spatially heterogeneous or sparsely vegetated where the vegetation structure strongly influences infiltration and soil retention. Infiltration and soil retention further influence soil water recharge, nutrient availability, and overall plant productivity. These key ecohydrologic relationships govern the ecologic resilience of the various states and community phases on many rangeland ecological sites (ESs) and are strongly affected by management practices, land use, and disturbances. However, ecohydrologic data and relationships are often missing in ESDs and state-and-transition models (STMs). To address this void, we used literature to determine the data required for inclusion of key ecohydrologic feedbacks into ESDs, developed a framework and methodology for data integration within the current ESD structure, and applied the framework to a select ES for demonstrative purposes. We also evaluated the utility of the Rangeland Hydrology and Erosion Model (RHEM) for assessment and enhancement of ESDs based in part on hydrologic function. We present the framework as a broadly applicable methodology for integrating ecohydrologic relationships and feedbacks into ESDs and resilience-based management strategies. Our proposed framework increases the utility of ESDs to assess rangelands, target conservation and restoration practices, and predict ecosystem responses to management. The integration of RHEM technology and our suggested framework on ecohydrologic relations expands the ecological foundation of the overall ESD concept for rangeland management and is well aligned with resilience-based, adaptive management of US rangelands. The proposed enhancement of ESDs will improve communication between private land owners and resource managers and researchers across multiple disciplines in the field of rangeland management

3D XY and lowest Landau level fluctuations in deoxygenated YBCO thin films

Conductivity measurements reflect vortex solid melting in YBCO films. Field-independent glass exponents nu_g=1.9 and z_g=4.0 describe the transition T_g(H) for 0<H<26 T. At low fields, 3D XY exponents nu_{XY}=0.63 and z_{XY}=1.25 are also observed, with z_{XY} smaller than expected. These compete with glass scaling according to multicritical theory. A predicted power-law form of T_g(H) is observed for 0.5T_c<T_g<T_c. For T_g<0.5T_c, 3D XY scaling fails, but a lowest Landau level analysis becomes possible, obtaining T_{c2}(H) with positive curvature.Comment: 4 pages, 5 .eps figures, To be published in Phys. Rev. Let