The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce.

BackgroundVerticillium wilt caused by the fungus Verticillium dahliae race 1 is among the top disease concerns for lettuce in the Salinas and Pajaro Valleys of coastal central California. Resistance of lettuce against V. dahliae race 1 was previously mapped to the single dominant Verticillium resistance 1 (Vr1) locus. Lines of tomato resistant to race 1 are known to contain the closely linked Ve1 and Ve2 genes that encode receptor-like proteins with extracellular leucine-rich repeats; the Ve1 and Ve2 proteins act antagonistically to provide resistance against V. dahliae race 1. The Vr1 locus in lettuce contains a cluster of several genes with sequence similarity to the tomato Ve genes. We used genome sequencing and/or PCR screening along with pathogenicity assays of 152 accessions of lettuce to investigate allelic diversity and its relationship to race 1 resistance in lettuce.ResultsThis approach identified a total of four Ve genes: LsVe1, LsVe2, LsVe3, and LsVe4. The majority of accessions, however, contained a combination of only three of these LsVe genes clustered on chromosomal linkage group 9 (within ~ 25 kb in the resistant cultivar La Brillante and within ~ 127 kb in the susceptible cultivar Salinas).ConclusionsA single allele, LsVe1L, was present in all resistant accessions and absent in all susceptible accessions. This allele can be used as a molecular marker for V. dahliae race 1 resistance in lettuce. A PCR assay for rapid detection of race 1 resistance in lettuce was designed based on nucleotide polymorphisms. Application of this assay allows identification of resistant genotypes in early stages of plant development or at seed-level without time- and labor-intensive testing in the field

Correction to: The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce.

Following publication of the original article [1], the author reported a processing error in Figure 5. This has been corrected in the original article

Genome-Wide Architecture of Disease Resistance Genes in Lettuce.

Genome-wide motif searches identified 1134 genes in the lettuce reference genome of cv. Salinas that are potentially involved in pathogen recognition, of which 385 were predicted to encode nucleotide binding-leucine rich repeat receptor (NLR) proteins. Using a maximum-likelihood approach, we grouped the NLRs into 25 multigene families and 17 singletons. Forty-one percent of these NLR-encoding genes belong to three families, the largest being RGC16 with 62 genes in cv. Salinas. The majority of NLR-encoding genes are located in five major resistance clusters (MRCs) on chromosomes 1, 2, 3, 4, and 8 and cosegregate with multiple disease resistance phenotypes. Most MRCs contain primarily members of a single NLR gene family but a few are more complex. MRC2 spans 73 Mb and contains 61 NLRs of six different gene families that cosegregate with nine disease resistance phenotypes. MRC3, which is 25 Mb, contains 22 RGC21 genes and colocates with Dm13. A library of 33 transgenic RNA interference tester stocks was generated for functional analysis of NLR-encoding genes that cosegregated with disease resistance phenotypes in each of the MRCs. Members of four NLR-encoding families, RGC1, RGC2, RGC21, and RGC12 were shown to be required for 16 disease resistance phenotypes in lettuce. The general composition of MRCs is conserved across different genotypes; however, the specific repertoire of NLR-encoding genes varied particularly of the rapidly evolving Type I genes. These tester stocks are valuable resources for future analyses of additional resistance phenotypes

Associating Phenotype to Genotype in Lettuce Using NGS, in silico Analyses, High Resolution Genetic Maps and Targeted Fine Mapping: abstract

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Evidence for Low-Pressure Crustal Anatexis During the Northeast Atlantic Break-up

While basaltic volcanism is dominate during rifting and continental breakup, felsic magmatism may also comprise important components of some rift margins. During International Ocean Discovery Program (IODP) Expedition 396 on the continental margin of Norway, a graphite-garnet-cordierite bearing dacitic, pyroclastic unit was recovered within early Eocene sediments on Mimir High (Site U1570), a marginal high on the Vøring transform margin. Here, we present a comprehensive textural, mineralogical, and petrological study of the dacite in order to assess its melting origin and emplacement. The major mineral phases (garnet, cordierite, quartz, plagioclase, alkali feldspar) are hosted in a fresh rhyolitic, highly vesicular, glassy matrix, locally mingled with sediments. The xenocrystic major element chemistry of garnet and cordierite, the presence of zircon inclusions with inherited cores, and thermobarometric calculations all support a crustal metapelite origin. While most magma-rich margin models favor crustal anatexis in the lower crust, thermobarometric calculations performed here show that the dacite was produced at upper-crustal depths (< 5 kbar) and high temperature (750–800 °C) with up to 3 wt% water content. In situ U-Pb analyses on zircon inclusions give a magmatic age of 54.6 ± 1.1 Ma, revealing the emplacement of the dacite post-dates the Paleocene-Eocene Thermal Maximum (PETM). Our results suggest that the opening of the North Atlantic was associated with a phase of low-pressure, high-temperature crustal melting at the onset of the main phase of magmatism