Low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: Citogenomic characterization of transposable elements and satellite DNA

Background: The cytogenomic study of repetitive regions is fundamental for the understanding of morphofunctional mechanisms and genome evolution. Passiflora edulis a species of relevant agronomic value, this work had its genome sequenced by next generation sequencing and bioinformatics analysis performed by RepeatExplorer pipeline. The clusters allowed the identification and characterization of repetitive elements (predominant contributors to most plant genomes). The aim of this study was to identify, characterize and map the repetitive DNA of P. edulis, providing important cytogenomic markers, especially sequences associated with the centromere. Results: Three clusters of satellite DNAs (69, 118 and 207) and seven clusters of Long Terminal Repeat (LTR) retrotransposons of the superfamilies Ty1/Copy and Ty3/Gypsy and families Angela, Athila, Chromovirus and Maximus-Sire (6, 11, 36, 43, 86, 94 and 135) were characterized and analyzed. The chromosome mapping of satellite DNAs showed two hybridization sites co-located in the 5S rDNA region (PeSat_1), subterminal hybridizations (PeSat_3) and hybridization in four sites, co-located in the 45S rDNA region (PeSat_2). Most of the retroelements hybridizations showed signals scattered in the chromosomes, diverging in abundance, and only the cluster 6 presented pericentromeric regions marking. No satellite DNAs and retroelement associated with centromere was observed. Conclusion: P. edulis has a highly repetitive genome, with the predominance of Ty3/Gypsy LTR retrotransposon. The satellite DNAs and LTR retrotransposon characterized are promising markers for investigation of the evolutionary patterns and genetic distinction of species and hybrids of Passiflora

Development of pollen grain in yellow passion-fruit (Passiflora edulis f. flavicarpa; Passifloraceae)

To clarify events occurring during pollen grain formation in yellow passion-fruit (Passiflora edulis f. flavicarpa), floral buds were collected at different stages of development. After bracket, petal and sepal removal the anthers were fixed, dehydrated, embedded in paraffin wax, sectioned at 10 mum and after differential dying with safranin O and fast green, mounted in Canada balsam and observed under optical microscope. Formation of the male gamete followed the normal pattern for angiosperms. Observation covered final sporogenic mass phase up to pollen grain formation; microsporangium tissue modifications were also observed. Microsporogenesis was characterized by sporogenic tissue differentiation in microsporic mother cells, followed by meiosis and resulting in tetrads. Microgametogenesis began with callose microspore release, subsequent mitosis, in addition to radial and tangential tapetum wall degradation, parietal layer compression nearer to the tapetum and endothecium widening, terminating in mature pollen grain formation

Características morfofisiológicas de plantas clonais de Passiflora alata crescidas em diferentes doses de nitrogênio e níveis de sombreamento

Plantas clonais de Passiflora alata foram submetidas a quatro níveis de sombreamento (0; 25; 50 e 75%) aos 75 dias após o estaqueamento (DAE). Dez dias após, aplicou-se nitrogênio (N) nas dosagens de 0; 25;50; 100 e 200 mg N kg-1 de solo. Verificou-se, aos 175 DAE, interação significativa (p<0,05) entre níveis de sombreamento (NS) e doses de N, para todos os parâmetros fotossintéticos avaliados. Observou-se um aumento na taxa fotossintética líquida com a elevação de NS e de N até a dose de 146 mg N kg-1. A taxa transpiratória apresentou efeito quadrático tanto para NS quanto para N, tendendo a aumentar com o incremento de NS e N até 50% de sombreamento e 137 mg N kg-1, respectivamente. A espessura dos tecidos do mesofilo foliar foi reduzida com a intensificação de NS. Os teores de clorofila a, b e total aumentaram com a elevação de NS e N. Todos os parâmetros de crescimento analisados não apresentaram diferenças significativas (p<0,05) para a interação NSxN. O maior acúmulo de biomassa seca total foi obtido em 69% de sombreamento e na dose de 113 mg N kg-1, ocorrendo um declínio nos NS nas e doses de N subsequentes. Em suma, os resultados demonstraram que o sombreamento moderado (50%), associado a um suprimento moderado de N, promoveu maior eficiência fotossintética e, consequentemente, incremento na biomassa seca, na planta toda

Fitonematóides detectados em <i>Passiflora</i> spp

Este trabalho teve como objetivo detectar fitonematóides associados à Passiflora spp. em condições de telad

Primeiro relato de <i>Meloidogyne</i> <i>mayaguensis</i> em passiflora silvestre

Este é o primeiro relato de M. mayaguensis em Passiflora misera. Além deste fitonematóide, foram detectados Helicotylenchus sp. e Rotylenchulus sp. nesta espéci