High resolution orthomosaics of African coral reefs: a tool for wide-scale benthic monitoring

Coral reefs play a key role in coastal protection and habitat provision. They are also well known for their recreational value. Attempts to protect these ecosystems have not successfully stopped large-scale degradation. Significant efforts have been made by government and research organizations to ensure that coral reefs are monitored systematically to gain a deeper understanding of the causes, the effects and the extent of threats affecting coral reefs. However, further research is needed to fully understand the importance that sampling design has on coral reef characterization and assessment. This study examines the effect that sampling design has on the estimation of seascape metrics when coupling semi-autonomous underwater vehicles, structure-from-motion photogrammetry techniques and high resolution (0.4 cm) underwater imagery. For this purpose, we use FRAGSTATS v4 to estimate key seascape metrics that enable quantification of the area, density, edge, shape, contagion, interspersion and diversity of sessile organisms for a range of sampling scales (0.5 m × 0.5 m, 2 m × 2 m, 5 m × 5 m, 7 m × 7 m), quadrat densities (from 1–100 quadrats) and sampling strategies (nested vs. random) within a 1655 m2 case study area in Ponta do Ouro Partial Marine Reserve (Mozambique). Results show that the benthic community is rather disaggregated within a rocky matrix; the embedded patches frequently have a small size and a regular shape; and the population is highly represented by soft corals. The genus Acropora is the more frequent and shows bigger colonies in the group of hard corals. Each of the seascape metrics has specific requirements of the sampling scale and quadrat density for robust estimation. Overall, the majority of the metrics were accurately identified by sampling scales equal to or coarser than 5 m × 5 m and quadrat densities equal to or larger than 30. The study indicates that special attention needs to be dedicated to the design of coral reef monitoring programmes, with decisions being based on the seascape metrics and statistics being determined. The results presented here are representative of the eastern South Africa coral reefs and are expected to be transferable to coral reefs with similar characteristics. The work presented here is limited to one study site and further research is required to confirm the findings

Anemia in the Elderly: not Always what it Seems.

Anemia in the elderly is a common but challenging clinical scenario. Here we the described the case of an elderly women who presented with anemia and elevated inflammation markers. After a complete diagnostic workup a clear etiology of the anemia could not be found and eventually a bone marrow biopsy was performed: she was diagnosed with myelodysplastic syndrome. She responded well to erythropoietin treatment but her inflammation markers remained elevated and a positron emission tomography was eventually performed. It turned out that the patient suffered from giant cell artheritis, and after steroid treatment her anemia completely resolved. Our case outlines that it is necessary to pay particular attention to anemia of chronic inflammation, which could be due to several and often masked conditions. Myelodysplatic syndromes should be considered when other causes have been ruled out, but their diagnosis can be difficult and requires expertise in the field

Sponges associated with octocorals in the Indo-Pacific, with the description of four new species

FIGURE 27. Size/frequency distribution of anisochela lengths of Mycale (Aegogropila) furcata n. sp.Published as part of Calcinai, Barbara, Bavestrello, Giorgio, Bertolino, Marco, Pica, Daniela, Wagner, Daniel & Cerrano, Carlo, 2013, Sponges associated with octocorals in the Indo-Pacific, with the description of four new species, pp. 1-61 in Zootaxa 3617 (1) on page 44, DOI: 10.11646/zootaxa.3617.1.1, http://zenodo.org/record/24815

SfM-based method to assess gorgonian forests (Paramuricea clavata (Cnidaria, Octocorallia))

Animal forests promote marine habitats morphological complexity and functioning. The red gorgonian, Paramuricea clavata, is a key structuring species of the Mediterranean coralligenous habitat and an indicator species of climate effects on habitat functioning. P. clavata metrics such as population structure, morphology and biomass inform on the overall health of coralligenous habitats, but the estimation of these metrics is time and cost consuming, and often requires destructive sampling. As a consequence, the implementation of long-term and wide-area monitoring programmes is limited. This study proposes a novel and transferable Structure from Motion (SfM) based method for the estimation of gorgonian population structure (i.e., maximal height, density, abundance), morphometries (i.e., maximal width, fan surface) and biomass (i.e., coenenchymal Dry Weight, Ash Free Dried Weight). The method includes the estimation of a novel metric (3D canopy surface) describing the gorgonian forest as a mosaic of planes generated by fitting multiple 5 cm × 5 cm facets to a SfM generated point cloud. The performance of the method is assessed for two different cameras (GoPro Hero4 and Sony NEX7). Results showed that for highly dense populations (17 colonies/m2), the SfM-method had lower accuracies in estimating the gorgonians density for both cameras (60% to 89%) than for medium to low density populations (14 and 7 colonies/m2) (71% to 100%). Results for the validation of the method showed that the correlation between ground truth and SfM estimates for maximal height, maximal width and fan surface were between R2 = 0.63 and R2 = 0.9, and R2 = 0.99 for coenenchymal surface estimation. The methodological approach was used to estimate the biomass of the gorgonian population within the study area and across the coralligenous habitat between −25 to −40 m depth in the Portofino Marine Protected Area. For that purpose, the coenenchymal surface of sampled colonies was obtained and used for the calculations. Results showed biomass values of dry weight and ash free dry weight of 220 g and 32 g for the studied area and to 365 kg and 55 Kg for the coralligenous habitat in the Marine Protected Area. This study highlighted the feasibility of the methodology for the quantification of P. clavata metrics as well as the potential of the SfM-method to improve current predictions of the status of the coralligenous habitat in the Mediterranean sea and overall management of threatened ecosystems

Living upside down: patterns of red coral settlement in a cave

Background: Larval settlement and intra-specific interactions during the recruitment phase are crucial in determining the distribution and density of sessile marine populations Marine caves are confined and stable habitats. As such, they provide a natural laboratory to study the settlement and recruitment processes in sessile invertebrates, including the valuable Mediterranean red coral Corallium rubrum, In the present study, the spatial and temporal variability of red coral settlers in an underwater cave was investigated by demographic and genetic approaches.Methods: Sixteen PVC tiles were positioned on the walls and ceiling of the Colombara Cave, Ligurian Sea, and recovered after twenty months. A total of 372 individuals of red coral belonging to two different reproductive events were recorded. Basal diameter, height, and number of polyps were measured, land seven microsatellites loci were used to evaluate the genetic relationships among individuals and the genetic structure.Results. Significant differences in the colonization rate were observed both between the two temporal cohorts and between ceiling and walls. No genetic structuring was observed between cohorts. Overall, high levels of relatedness among individuals were found.Conclusion: The results show that C. rubrum individuals on tiles are highly related at very small spatial scales, suggesting that nearby recruits are likely to be sibs. Self-recruitment and the synchronous settlement of clouds of larvae could be possible explanations for the observed pattern.</p

Characteristics and outcomes of patients with acute myeloid leukemia admitted to intensive care unit with acute respiratory failure: a post-hoc analysis of a prospective multicenter study

Acute myeloid leukemia; Acute respiratory failure; Hospital mortalityLeucemia mieloide aguda; Insuficiencia respiratoria aguda; Mortalidad hospitalariaLeucèmia mieloide aguda; Insuficiència respiratòria aguda; Mortalitat hospitalàriaBackground Acute respiratory failure (ARF) is the leading cause of intensive care unit (ICU) admission in patients with Acute Myeloid Leukemia (AML) and data on prognostic factors affecting short-term outcome are needed. Methods This is a post-hoc analysis of a multicenter, international prospective cohort study on immunocompromised patients with ARF admitted to ICU. We evaluated hospital mortality and associated risk factors in patients with AML and ARF; secondly, we aimed to define specific subgroups within our study population through a cluster analysis. Results Overall, 201 of 1611 immunocompromised patients with ARF had AML and were included in the analysis. Hospital mortality was 46.8%. Variables independently associated with mortality were ECOG performance status ≥ 2 (OR = 2.79, p = 0.04), cough (OR = 2.94, p = 0.034), use of vasopressors (OR = 2.79, p = 0.044), leukemia-specific pulmonary involvement [namely leukostasis, pulmonary infiltration by blasts or acute lysis pneumopathy (OR = 4.76, p = 0.011)] and liver SOFA score (OR = 1.85, p = 0.014). Focal alveolar chest X-ray pattern was associated with survival (OR = 0.13, p = 0.001). We identified 3 clusters, that we named on the basis of the most frequently clinical, biological and radiological features found in each cluster: a “leukemic cluster”, with high-risk AML patients with isolated, milder ARF; a “pulmonary cluster”, consisting of symptomatic, highly oxygen-requiring, severe ARF with diffuse radiological findings in heavily immunocompromised patients; a clinical “inflammatory cluster”, including patients with multi-organ failures in addition to ARF. When included in the multivariate analysis, cluster 2 and 3 were independently associated with hospital mortality. Conclusions Among AML patients with ARF, factors associated with a worse outcome are related to patient’s background (performance status, leukemic pulmonary involvement), symptoms, radiological findings, the need for vasopressors and the liver SOFA score. We identified three specific ARF syndromes in AML patients, which showed a prognostic significance and could guide clinicians to optimize management strategies

Demosponge diversity from North Sulawesi, with the description of six new species

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