Dynamic communicability predicts infectiousness

Using real, time-dependent social interaction data, we look at correlations between some recently proposed dynamic centrality measures and summaries from large-scale epidemic simulations. The evolving network arises from email exchanges. The centrality measures, which are relatively inexpensive to compute, assign rankings to individual nodes based on their ability to broadcast information over the dynamic topology. We compare these with node rankings based on infectiousness that arise when a full stochastic SI simulation is performed over the dynamic network. More precisely, we look at the proportion of the network that a node is able to infect over a fixed time period, and the length of time that it takes for a node to infect half the network.We find that the dynamic centrality measures are an excellent, and inexpensive, proxy for the full simulation-based measures

Power system static and dynamic security studies for the 1st phase of Crete Island Interconnection

The island of Crete is currently served by an autonomous electrical system being fed by oil-fired (Heavy fuel or light Diesel oil) thermal power plants and renewables (wind and PVs). The peak load and annual electric energy consumption are approximately 600 MW and 3 TWh respectively; wind and photovoltaic parks contribute approximately 20% of the electricity needs of the island. Due to the expensive fuel used, the Cretan power system has very high electric energy generation cost compared to the Greek mainland. On the other side the limited size of the system poses severe limitations to the penetration of renewable energy sources, not allowing to further exploit the high wind and solar potential of the island. According to the Ten Year Network Development Plan (TYNDP) of the Greek TSO (Independent Power Transmission Operator S.A. IPTO S.A.), the interconnection of Crete to the mainland Transmission System of Greece will be realized through two links: A 150 kV HVAC link between the Peloponnese and the Crete (Phase I) and a HVDC link connecting the metropolitan area of Athens with Crete (Phase II). The total length of submarine and underground cable of the HVAC link will be approximately 174km; it is at the limits of the AC technology and the longest and deepest worldwide at 150 kV level. A number of studies have been conducted by a joint group of IPTO and Hellenic Electricity Distribution Network Operator (HEDNO) for the design of this interconnection. This paper presents briefly the power system static and dynamic studies conducted for the design of the AC link and its operation. Firstly, the paper presents the main results of the static security study regarding the calculation of the maximum power transfer capability of the link and the selection of the reactive power compensation scheme of the cable. Results from dynamic security analysis studies are also presented. The small-signal stability analysis concludes that a new (intra-area) electromechanical oscillation is introduced to the National System after the interconnection. The damping of the electromechanical oscillations is sufficient; however the operation of power system stabilizers at power plants located both at the mainland and at Crete power system can increase significantly the damping of important oscillation modes. Finally with respect to the risk of loss of synchronism after a significant disturbance in the system of Crete, such as a three-phase fault (“transient stability”)- enough safety margin is estimated by means of Critical Clearing Time calculations

Power system static and dynamic security studies for the 1st phase of Crete Island Interconnection

The island of Crete is currently served by an autonomous electrical system being fed by oil-fired (Heavy fuel or light Diesel oil) thermal power plants and renewables (wind and PVs). The peak load and annual electric energy consumption are approximately 600 MW and 3 TWh respectively; wind and photovoltaic parks contribute approximately 20% of the electricity needs of the island. Due to the expensive fuel used, the Cretan power system has very high electric energy generation cost compared to the Greek mainland. On the other side the limited size of the system poses severe limitations to the penetration of renewable energy sources, not allowing to further exploit the high wind and solar potential of the island. According to the Ten Year Network Development Plan (TYNDP) of the Greek TSO (Independent Power Transmission Operator S.A. IPTO S.A.), the interconnection of Crete to the mainland Transmission System of Greece will be realized through two links: A 150 kV HVAC link between the Peloponnese and the Crete (Phase I) and a HVDC link connecting the metropolitan area of Athens with Crete (Phase II). The total length of submarine and underground cable of the HVAC link will be approximately 174km; it is at the limits of the AC technology and the longest and deepest worldwide at 150 kV level. A number of studies have been conducted by a joint group of IPTO and Hellenic Electricity Distribution Network Operator (HEDNO) for the design of this interconnection. This paper presents briefly the power system static and dynamic studies conducted for the design of the AC link and its operation. Firstly, the paper presents the main results of the static security study regarding the calculation of the maximum power transfer capability of the link and the selection of the reactive power compensation scheme of the cable. Results from dynamic security analysis studies are also presented. The small-signal stability analysis concludes that a new (intra-area) electromechanical oscillation is introduced to the National System after the interconnection. The damping of the electromechanical oscillations is sufficient; however the operation of power system stabilizers at power plants located both at the mainland and at Crete power system can increase significantly the damping of important oscillation modes. Finally with respect to the risk of loss of synchronism after a significant disturbance in the system of Crete, such as a three-phase fault (“transient stability”)- enough safety margin is estimated by means of Critical Clearing Time calculations

Fournier's gangrene in a patient after third-degree burns: a case report

<p>Abstract</p> <p>Introduction</p> <p>Fournier's gangrene is characterized by tissue ischemia leading to rapidly progressing necrotizing fasciitis.</p> <p>Case presentation</p> <p>We present the case of a patient with Fournier's gangrene after third-degree burns. Clinical manifestations, laboratory results and treatment options are discussed.</p> <p>Conclusion</p> <p>Fournier's gangrene is a surgical emergency. Although it can be lethal, it is still a challenging situation in the field of surgical infections.</p

Spatio-temporal Models of Lymphangiogenesis in Wound Healing

Several studies suggest that one possible cause of impaired wound healing is failed or insufficient lymphangiogenesis, that is the formation of new lymphatic capillaries. Although many mathematical models have been developed to describe the formation of blood capillaries (angiogenesis), very few have been proposed for the regeneration of the lymphatic network. Lymphangiogenesis is a markedly different process from angiogenesis, occurring at different times and in response to different chemical stimuli. Two main hypotheses have been proposed: 1) lymphatic capillaries sprout from existing interrupted ones at the edge of the wound in analogy to the blood angiogenesis case; 2) lymphatic endothelial cells first pool in the wound region following the lymph flow and then, once sufficiently populated, start to form a network. Here we present two PDE models describing lymphangiogenesis according to these two different hypotheses. Further, we include the effect of advection due to interstitial flow and lymph flow coming from open capillaries. The variables represent different cell densities and growth factor concentrations, and where possible the parameters are estimated from biological data. The models are then solved numerically and the results are compared with the available biological literature.Comment: 29 pages, 9 Figures, 6 Tables (39 figure files in total

Sparse matrix computations for dynamic network centrality

Time sliced networks describing human-human digital interactions are typically large and sparse. This is the case, for example, with pairwise connectivity describing social media, voice call or physical proximity, when measured over seconds, minutes or hours. However, if we wish to quantify and compare the overall time-dependent centrality of the network nodes, then we should account for the global flow of information through time. Because the time-dependent edge structure typically allows information to diffuse widely around the network, a natural summary of sparse but dynamic pairwise interactions will generally take the form of a large dense matrix. For this reason, computing nodal centralities for a timedependent network can be extremely expensive in terms of both computation and storage; much more so than for a single, static network. In this work, we focus on the case of dynamic communicability, which leads to broadcast and receive centrality measures. We derive a new algorithm for computing time-dependent centrality that works with a sparsified version of the dynamic communicability matrix. In this way, the computation and storage requirements are reduced to those of a sparse, static network at each time point. The new algorithm is justified from first principles and then tested on a large scale data set. We find that even with very stringent sparsity requirements (retaining no more than ten times the number of nonzeros in the individual time slices), the algorithm accurately reproduces the list of highly central nodes given by the underlying full system. This allows us to capture centrality over time with a minimal level of storage and with a cost that scales only linearly with the number of time points. We also describe and test three variants of the proposed algorithm that require fewer parameters and achieve a further reduction in the computational cost

3D Multi-Cell Simulation of Tumor Growth and Angiogenesis

We present a 3D multi-cell simulation of a generic simplification of vascular tumor growth which can be easily extended and adapted to describe more specific vascular tumor types and host tissues. Initially, tumor cells proliferate as they take up the oxygen which the pre-existing vasculature supplies. The tumor grows exponentially. When the oxygen level drops below a threshold, the tumor cells become hypoxic and start secreting pro-angiogenic factors. At this stage, the tumor reaches a maximum diameter characteristic of an avascular tumor spheroid. The endothelial cells in the pre-existing vasculature respond to the pro-angiogenic factors both by chemotaxing towards higher concentrations of pro-angiogenic factors and by forming new blood vessels via angiogenesis. The tumor-induced vasculature increases the growth rate of the resulting vascularized solid tumor compared to an avascular tumor, allowing the tumor to grow beyond the spheroid in these linear-growth phases. First, in the linear-spherical phase of growth, the tumor remains spherical while its volume increases. Second, in the linear-cylindrical phase of growth the tumor elongates into a cylinder. Finally, in the linear-sheet phase of growth, tumor growth accelerates as the tumor changes from cylindrical to paddle-shaped. Substantial periods during which the tumor grows slowly or not at all separate the exponential from the linear-spherical and the linear-spherical from the linear-cylindrical growth phases. In contrast to other simulations in which avascular tumors remain spherical, our simulated avascular tumors form cylinders following the blood vessels, leading to a different distribution of hypoxic cells within the tumor. Our simulations cover time periods which are long enough to produce a range of biologically reasonable complex morphologies, allowing us to study how tumor-induced angiogenesis affects the growth rate, size and morphology of simulated tumors

Modern temporal network theory: A colloquium

The power of any kind of network approach lies in the ability to simplify a complex system so that one can better understand its function as a whole. Sometimes it is beneficial, however, to include more information than in a simple graph of only nodes and links. Adding information about times of interactions can make predictions and mechanistic understanding more accurate. The drawback, however, is that there are not so many methods available, partly because temporal networks is a relatively young field, partly because it more difficult to develop such methods compared to for static networks. In this colloquium, we review the methods to analyze and model temporal networks and processes taking place on them, focusing mainly on the last three years. This includes the spreading of infectious disease, opinions, rumors, in social networks; information packets in computer networks; various types of signaling in biology, and more. We also discuss future directions.Comment: Final accepted versio

Brachypodium distachyon as a model for defining the allergen potential of non-prolamin proteins

Epitope databases and the protein sequences of published plant genomes are suitable to identify some of the proteins causing food allergies and sensitivities. Brachypodium distachyon, a diploid wild grass with a sequenced genome and low prolamin content, is the closest relative of the allergen cereals, such as wheat or barley. Using the Brachypodium genome sequence, a workflow has been developed to identify potentially harmful proteins which may cause either celiac disease or wheat allergy-related symptoms. Seed tissue-specific expression of the potential allergens has been determined, and intact epitopes following an in silico digestion with several endopeptidases have been identified. Molecular function of allergen proteins has been evaluated using Gene Ontology terms. Biologically overrepresented proteins and potentially allergen protein families have been identified. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10142-012-0294-z) contains supplementary material, which is available to authorized users