Potential Response of Soil-Borne Fungal Pathogens Affecting Crops to a Scenario of Climate Change in Europe

A study was carried out on the potential response of soil-borne pathogens causing crop yield losses under a climate change scenario in Europe. A controlled chamber set of experiments was carried out to quantify pathogen response to temperature using pure colonies of three soil-borne fungi, representative of low (Fusarium nivale), medium-high (Athelia rolfsii) and high (Macrophomina phaseolina) temperature requirements. A generic model to simulate fungal growth response to temperature based on these experiments was developed and linked to a soil temperature model component, and to components to simulate soil water content accounting for crop water uptake of potential hosts. Pathogens relative growth was simulated over Europe using the IPCC A1B emission scenario as realization of the Hadley-CM3 global climate model, available from the European Commission and processed for use with biophysical models. The simulations resulting from using the time span centred on 2030 were compared to the baseline, centred on the year 2000, using a sample of 30 years of daily weather. The general trend of soil-borne pathogens response to the scenario of climate change is a relative increase in growth in colder areas of Europe, as a function of their temperature requirements. Projections of F. nivale in the future indicate a relative increase of this winter pathogen of wheat in Northern European countries. A. rolfsii and M. phaseolina, two soil-borne pathogens typical of warmer agricultural areas, could find more favourable conditions in areas of the Central Europe, but they differentiated in Southern Europe where A. rolfsii resulted affected by summer soil temperatures above optimum

Replant problems in South Tyrol: role of fungal pathogens and microbial populations in conventional and organic apple orchards

South Tyrol, the main Italian apple growing area, is characterised by an highly intensive soil cultivation. Previous investigations shows the existence of replant disorders although it has not been evaluated which are the main causes. A survey has been carried out in this area with two main aims I) to evaluate the role of soil borne pathogens in apple replant disease and II) to evaluate the effect of soil management toward soil borne pathogens causing replant diseases. The experimental sites were chosen in order to obtain three couples of contiguous conventional and organic apple orchards. Soil sickness test with young apple plants gave a significant growth reduction in all soil samples if compared to a peat control. Among all root colonising fungi (Fusarium oxysporum, F. solani, Aphanomyces sp., Cy/incrocarpon sp., Rhizoctonia sp. and Pythium sp.) some Rhizoctonia solani strains and all Pythium spp. were the most pathogenic. In all cases organic management seems to reduce the soil sickness severity caused by root rot fungal pathogens

D1.1 BIO-INCROP Report Disseminated at internal level. Apple replant disease (ARD) 1

Deliverable of activity performed in the first 12 months of BIO-INCROP project on WP 1- Task 1 Evaluation of biotic components involved in “replant disease” etiology

Auxin-mediated relationships between apple plants and root inhabiting fungi: impact on root pathogens and potentialities of growth-promoting populations.

This study aimed to elucidate the relationship between plant hosts and root-colonizing fungi recovered from apple orchard soils that had been replanted over multiple generations. Functional relationships of three groups of filamentous fungi (Ceratobasidium sp., Cylindrocarpon-like group and Fusarium acuminatum) with apple rootstocks were evaluated in plant growth bioassays. The Cylindrocarpon-like group and Ceratobasidium sp. showed a relationship with the host plant varying from pathogenic to commensal through to mutualistic for the latter group, while that of F. acuminatum tended to be mutualistic. Seven fungal isolates of each group, which induced the highest plant growth in bioassays, were evaluated for auxin (IAA) and gibberellin (GA3 and GA4) production in culture filtrate. All isolates of F. acuminatum as well as most of those of the Ceratobasidium sp. and ylindrocarpon-like groups produced IAA in culture filtrate. IAA production was evaluated for additional isolates of endophytic fungal species from fruit tree orchards and the functionality of IAA was confirmed by growing in vitro micropropagated plantlets of apple rootstock on MS medium supplemented with fungal culture filtrate. Findings from his study may explain the difficulty in defining the recise role of diverse root-colonizing fungal populations in replant disease aetiology of fruit tree orchards. However, the results demonstrate the presence of a positive and widely available biotic component of the orchard soil biology that may be exploited for the benefit of tree growth and production

Estimating the soil hydraulic functions of some olive orchards: Soil management implications for water saving in soils of salento peninsula (Southern Italy)

Saving water resources in agriculture is a topic of current research in Mediterranean environments, and rational soil management can allow such purposes. The Beerkan Estimation of Soil Transfer parameters (BEST) procedure was applied in five olive orchards of Salento peninsula (southern Italy) to estimate the soil physical and hydraulic properties under alternative soil management (i.e., no-tillage (NT) and minimum tillage (MT)), and to quantify the impact of soil management on soil water conservation. Results highlighted the soundness of BEST predictions since they provided consistent results in terms of soil functions or capacitive-based soil indicators when (i) the entire data set was grouped by homogeneous classes of texture, bulk density, and capillarity of the soil, (ii) the predictions were compared with the corresponding water retention measures independently obtained in lab, and (iii) some correlations of literature were checked. BEST was applied to establish a comparison at Neviano (NE) and Sternatia (ST) sites. The two neighboring NT soils compared at NE showed substantial discrepancies in soil texture (i.e., sandy loam (NE-SL) or clay (NE-C)). This marked difference in soil texture could determine a worsening of the relative field capacity at the NE-SL site (relative field capacity, RFC < 0.6), as compared to NE-C where RFC was optimal. The current soil management determined a similar effect (RFC < 0.6) at Sternatia (ST-MT vs. ST-NT), but the worsening in soil properties, due to soil tillage, must be considered substantially transient, as progressive improvement is expected with the restoration of the soil structure. The results of this work suggest that strategic MT can be a viable solution to manage the soil of Salento olive orchards

L'impatto di comunità microbiche associate alle radici di melo in suoli stanchi nei meleti dell'Europa centrale

This paper is a paper oriented to Italian growers . It aims at disseminating the main findings of a study performed within Work Package 1 of BIO-INCROP project that has already been published on Applied Soil Ecology. This short paper presents a survey which refers to three apple growing areas of Italy, Germany and Austria. The study on soil samples taken from multigeneration apple orchards of those areas was performed with plant growth assay in pot at Laimburg Research Center (Bolzano Italy), while root-colonizing fungi and nematodes were evaluated in specialized laboratories. The main findings are described with the support of pictures and tables showing the plant growth response in relation to root colonization of rootstock plantlets

Rosellinia necatrix attack according to soil features in the Mediterranean environment

A study was carried out on Rosellinia necatrix attack on young woody plants, as possibly affected by selected soil features under three water regimes. Six different soil systems representing five agro-environments and one forest in the Puglia Region (southern Italy – Mediterranean climate) were compared. R. necatrix attack on sweet cherry trees was simulated using artificial inoculum and saplings of Prunus mahaleb, the most widely used rootstock of sweet and sour cherries, monitored during the spring period. Soil features significantly influenced disease score, which did not differ from one water regime to another, even though disease level in the different soils was affected by water content. Rosellinia mahaleb saplings grown in forest soil showed the highest disease score, which differed significantly from that observed in all the agricultural soils tested in this study. Amongst these, disease score was lower in sandy soils than in soils that were richer in loamy fraction

Impact of cover crop in pre-plant of apple orchards: relationship between crop health, root inhabiting fungi and rhizospheric bacteria

Manici, L. M., Kelderer, M., Caputo, F., Nicoletti, F., De Luca Picione, F. and Topp A. R. 2015. Replant disease of fruit tree orchards has a multifactorial etiology, mainly due to the decline in soil biodiversity along with an increase in root rot pathogens, which can be principally countered with appropriate cropping practices. Therefore, a study on the impact of cover crops on plant health of young fruit trees in long-term orchards was performed. Bioassays were performed over two consecutive growing cycles using soil from a multigeneration apple orchard affected by replant disease. First, a cycle was performed with three cover crops (alfalfa, barley, marigold) and apple rootstock plantlets; at the end, the above-ground part of the plant was removed and root residues left in the soil. In the second cycle, an apple orchard planting was simulated upon the first experimental design. Changes of diversity and composition of root inhabiting fungi and rhizospheric bacteria were evaluated as well as apple plant growth response to the pre-plant treatments. Results suggest that one cycle with alternate plants was sufficient to induce changes at the rhizosphere level, despite soil microbial resilience caused by the same long-term soil management. Rhizospheric bacteria were generally affected by plant genotype. Findings suggest that all three different cover crops can harbor almost all fungal species that colonize apple in replanted orchards (Fusarium spp., Pythum spp., binucleate Rhizoctonia sp., Cylindrocarponlike-fungi and a several nonpathogenic saprophytic fungi named ‘‘other’’), but their infection frequency varied according to the host plant. A single pre-plant break treatment did not overall differ significantly in plant growth of subsequent apple tree; however, break with marigold, which increased abundance of nonpathogenic root inhabiting fungi more than other cover crops, gave significantly higher plant growth than obtained after barley. This study provides evidence about cover crop potential to increase soil diversity in long-term permanent cropping systems and to manipulate root colonizing fungi involved in crop health