High frequency electro-optic measurement of strained silicon racetrack resonators

The observation of the electro-optic effect in strained silicon waveguides has been considered as a direct manifestation of an induced $\chi^{(2)}$ non-linearity in the material. In this work, we perform high frequency measurements on strained silicon racetrack resonators. Strain is controlled by a mechanical deformation of the waveguide. It is shown that any optical modulation vanishes independently of the applied strain when the applied voltage varies much faster than the carrier effective lifetime, and that the DC modulation is also largely independent of the applied strain. This demonstrates that plasma carrier dispersion is responsible for the observed electro-optic effect. After normalizing out free carrier effects, our results set an upper limit of $8\,pm/V$ to the induced high-speed $\chi^{(2)}_{eff,zzz}$ tensor element at an applied stress of $-0.5\,GPa$. This upper limit is about one order of magnitude lower than the previously reported values for static electro-optic measurements

A DTA/GC for the in Situ Identification of the Martian Surface Material

The composition and mineralogy of the Martian surface material remain largely unknown. To determine its composition and mineralogy, several techniques are being considered for in situ analyses of the Martian surface material during missions to Mars. We have successfully developed, constructed, and tested a laboratory DTA/GC. The DTA is a Dupont model 1600 high temperature DTA coupled with a GC equipped with a MID detector. The system is operated by a Sun Sparc 11 workstation. When gas evolves during a thermal chemical event, it is shunted into the GC and the temperature is recorded in association with the specific thermal event. We have used this laboratory instrument to define experimental criteria necessary for determining the composition and mineralogy of the Martian surface in situ (e.g., heating of sample to 1100 C to distinguish clays). Our studies indicate that DTA/GC will provide a broad spectrum of mineralogical and evolved gas data pertinent to exobiology, geochemistry, and geology

Paleobiomarkers and defining exobiology experiments for future Mars experiments

Mars is a cold, dry planet with an oxidizing surface bombarded by ultraviolet and ionizing radiation, making prospects for an extant Mars biota bleak. Yet, it is suggested that early Earth and early Mars were similar enought that life may have evoled on Mars. If life did evolve on Mars, what evidence for its existence might we find? What constitutes a Martian paleobiomarker, and how can we distinguish such a marker from abiotically produced substances? The topics studied to answer this question include carbon and nitrogen cycling, as well as the stability and relative abundance of their intermediates in microbially dominated ecosystems. The microbially dominated ecosystems studied are the crytoendolithic microbial community living within sand rocks, the endoevaporite microbial community living inside salt crystals, and the microbial communities living beneath perennially ice-covered lakes and hypersaline ponds. The nitrogen cycle of these communities ranges from simple, where only assimilation occurs, to the more complex, where a complete cycle occurs. The carbon cycle of these communities appears to be complete

Ecological considerations for possible Martian biota

Current climatic and geological evidence suggests that, like early Earth, conditions on ancient Mars may also have been favorable for the origin and evolution of life. The primordial atmospheres of the two planets were quite similar, composed primarily of CO2, N2, and water vapor at a total atmospheric pressure of approximately 1 bar. Each of these gases are important for the evolution of biological systems. With the exception of nitrogen, there seems to have been a sufficient supply of the biogenic elements C, H, O, P, and S (CHOPS) on early Mars for life to have evolved. It was postulated that primordial Mars contained only 18 mb of nitrogen in the form of N2 given that only fixed nitrogen is utilized by living systems. Laboratory tests performed at a total pressure of 1 bar and various partial pressures of dinitrogen (pN2 1-780 mb) show that nitrogen fixing organisms grow at pN2's of 18 mb or less, although the biomass and growth rates are decreased. The calcualted in vivo Km's ranged from 46 mb to 130 mb. If organisms adapted on Earth to a pH2 of 780 mb are capable of growing at these low partial pressures, it is conceivable that nitrogen was not the limiting factor in the evolution of life on early Mars

Cell-free prediction of protein expression costs for growing cells

Translating heterologous proteins places significant burden on host cells, consuming expression resources leading to slower cell growth and productivity. Yet predicting the cost of protein production for any given gene is a major challenge, as multiple processes and factors combine to determine translation efficiency. To enable prediction of the cost of gene expression in bacteria, we describe here a standard cell-free lysate assay that provides a relative measure of resource consumption when a protein coding sequence is expressed. These lysate measurements can then be used with a computational model of translation to predict the in vivo burden placed on growing E. coli cells for a variety of proteins of different functions and lengths. Using this approach, we can predict the burden of expressing multigene operons of different designs and differentiate between the fraction of burden related to gene expression compared to action of a metabolic pathway

Effects of Flight on Gene Expression and Aging in the Honey Bee Brain and Flight Muscle

Honey bees move through a series of in-hive tasks (e.g., “nursing”) to outside tasks (e.g., “foraging”) that are coincident with physiological changes and higher levels of metabolic activity. Social context can cause worker bees to speed up or slow down this process, and foragers may revert back to their earlier in-hive tasks accompanied by reversion to earlier physiological states. To investigate the effects of flight, behavioral state and age on gene expression, we used whole-genome microarrays and real-time PCR. Brain tissue and flight muscle exhibited different patterns of expression during behavioral transitions, with expression patterns in the brain reflecting both age and behavior, and expression patterns in flight muscle being primarily determined by age. Our data suggest that the transition from behaviors requiring little to no flight (nursing) to those requiring prolonged flight bouts (foraging), rather than the amount of previous flight per se, has a major effect on gene expression. Following behavioral reversion there was a partial reversion in gene expression but some aspects of forager expression patterns, such as those for genes involved in immune function, remained. Combined with our real-time PCR data, these data suggest an epigenetic control and energy balance role in honey bee functional senescence

The velocity-density relation in the spherical model

We study the cosmic velocity-density relation using the spherical collapse model (SCM) as a proxy to non-linear dynamics. Although the dependence of this relation on cosmological parameters is known to be weak, we retain the density parameter Omega_m in SCM equations, in order to study the limit Omega_m -> 0. We show that in this regime the considered relation is strictly linear, for arbitrary values of the density contrast, on the contrary to some claims in the literature. On the other hand, we confirm that for realistic values of Omega_m the exact relation in the SCM is well approximated by the classic formula of Bernardeau (1992), both for voids (delta<0) and for overdensities up to delta ~ 3. Inspired by this fact, we find further analytic approximations to the relation for the whole range delta from -1 to infinity. Our formula for voids accounts for the weak Omega_m-dependence of their maximal rate of expansion, which for Omega_m < 1 is slightly smaller that 3/2. For positive density contrasts, we find a simple relation div v = 3 H_0 (Omega_m)^(0.6) [ (1+delta)^(1/6) - (1+delta)^(1/2) ], that works very well up to the turn-around (i.e. up to delta ~ 13.5 for Omega_m = 0.25 and neglected Omega_Lambda). Having the same second-order expansion as the formula of Bernardeau, it can be regarded as an extension of the latter for higher density contrasts. Moreover, it gives a better fit to results of cosmological numerical simulations.Comment: 11 pages, 6 figures. Accepted for publication in MNRA

The Antarctic dry valley lakes: Relevance to Mars

The similarity of the early environments of Mars and Earth, and the biological evolution which occurred on early Earth, motivates exobiologists to seriously consider the possiblity of an early Martian biota. Environments are being identified which could contain Martian life and areas which may presently contain evidence of this former life. Sediments which were thought to be deposited in large ice-covered lakes are present on Mars. Such localities were identified within some of the canyons of the Valles Marineris and more recently in the ancient terrain in the Southern Hemisphere. Perennially ice-covered Antarctic lakes are being studied in order to develop quantitative models that relate environmental factors to the nature of the biological community and sediment forming processes. These models will be applied to the Martian paleolakes to establish the scientific rationale for the exobiological study of ancient Martian sediments

Technical note: Rapid mineral determination in forages by X-ray fluorescence

A large portion of the cow's ration is composed of forages that can vary greatly in mineral concentrations, which may affect animal performance and health. Current methods for mineral analysis require sample destruction either through wet or dry ashing and complex analytical techniques for individual minerals. Energy dispersive X-ray fluorescence (EDXRF) is a nondestructive, multi-mineral, spectroscopy technique, which makes mineral quantification simple, direct, and affordable. The study objective was to evaluate the prediction performance of EDXRF of Na, Mg, P, S, Cl, Ca, K, Mn, Fe, Cu, and Zn concentrations in forages. Twelve certified plant samples with a wide range in mineral concentrations were used to develop calibrations, and 35 forages (18 alfalfa hays, 10 grass hays, 7 corn silages) with measured mineral concentrations, which were collected over several years from 3 proficiency programs, were used as an independent validation set. All the samples were previously dried and finely ground and were prepared by compressing them into a round dense pellet, 40 mm in diameter, using a 40-ton pneumatic laboratory press. Samples were scanned using an EDXRF instrument enhanced for lighter minerals like Na and Mg. Samples were scanned at 20 keV and at 40 KeV associated with an Al filter, for a total analysis time of approximately 6 min. Calibrations were developed with Bruker SpectraEDX (Bruker, Hamburg, Germany) software and optimized to minimize the standard error of calibration. All of the minerals had acceptable calibration performance with coefficient of determination ranging from 0.93 (P) and 0.99 (Cl, Ca, and Mn) and coefficients of variation within 5 to 14%, which are similar to the coefficients of variation of the reference analysis. The coefficients of variation for Na was an exception, with a coefficients of variation of 29%. The validation set obtained similar statistical results as that observed in calibration. The root mean square error of prediction corrected for bias was similar to the standard error of calibration, indicating that it is possible to build a robust calibrations that performed well across different type of forages by using 12 reference samples with a sufficient range in mineral concentrations that were determined accurately. A bias correction was necessary to improve prediction accuracy only for K (−0.23% dry matter) and Ca (−0.16% dry matter). Energy dispersive X-ray fluorescence demonstrated the ability to be an accurate, direct, and simple technique for forage mineral analysis