14 research outputs found
Morphological and molecular characterization of freshwater prawn of genus Macrobrachium in the coastal area of Cameroon
PCA (left plot) and DAPC (right plot) obtained from using the reduced set of ‘private SNPs’ (N = 72 SNPs, called ‘private SNPs80’ panel; see Methods).
PCA–principal component analysis; DAPC–discriminant analysis of the principal components. M_ch–M. chevalieri; M_dx–M. dux; M_fe–M. felicinum; M_ma–M. macrobrachion; M_so–M. sollaudii; M_sp–M. sp; M_vo–M. vollenhovenii.</p
Cluster membership classification of <i>Macrobrachium</i> species and the Bayesian information criterion (BIC) plot obtained from the full set SNPs (N = 1,814) using the Adegenet package assuming four (K = 4) and five (K = 5) populations.
Each bar in the admixture plot (left) represents an individual: M.ch–M. chevalieri; M.dx–M. dux; M.so–M. sollaudii; M.fe–M. felicinum; M.sp–M. sp; M.ma–M. macrobrachion; M.vo–M. vollenhovenii.</p
S1 Fig -
PCA plot obtained from a full set of 1,814 SNPs (A), 174 private SNPs (B) and 72 ‘private SNPs 80’ (C). M_ch–M. chevalieri;M_dx–M. dux;M_fe–M. felicinum; M_ma–M. macrobrachion; M_so–M. sollaudii; M_sp–M. sp; M_vo–M. vollenhovenii. (TIF)</p
Distribution of minor allele frequency (MAF) for different <i>Macrobrachium</i> species: <i>M</i>. <i>dux</i>, <i>M</i>. <i>macrobrachion</i>, <i>M</i>. <i>sollaudii</i>, <i>M</i>. <i>vollenhovenii</i>, <i>M</i>. <i>chevalieri; M</i>. <i>felicinum</i>, and <i>M</i>. <i>sp</i>.
Distribution of minor allele frequency (MAF) for different Macrobrachium species: M. dux, M. macrobrachion, M. sollaudii, M. vollenhovenii, M. chevalieri; M. felicinum, and M. sp.</p
PCA (left plot) and DAPC (right plot) obtained from using a full set of SNPs (N = 1,814).
PCA–principal component analysis; DAPC–discriminant analysis of principal components. M_ch–M. chevalieri;M_dx–M. dux;M_fe–M. felicinum; M_ma–M. macrobrachion; M_so–M. sollaudii; M_sp–M. sp; M_vo–M. vollenhovenii.</p
Pictures of seven <i>Macrobrachium</i> species in the coastal area of Cameroon identified based on morphological analysis using [10, 31] keys.
Pictures of seven Macrobrachium species in the coastal area of Cameroon identified based on morphological analysis using [10, 31] keys.</p
Summary statistics of the ’private SNPs’ (‘private SNPs80’; N = 72) identified in the study.
Summary statistics of the ’private SNPs’ (‘private SNPs80’; N = 72) identified in the study.</p
Admixture results obtained from using 72 ’private SNPs’ based on the ADMIXTURE software.
(TIF)</p
Admixture results obtained from using 174 ’private SNPs’ based on the ADMIXTURE software.
(TIF)</p