19 research outputs found
Recommended from our members
Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci
Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus,
some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model
predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with the fas operon central
to virulence. The Fas proteins synthesize, modify, and activate a mixture of growth regulating cytokinins, which cause a
hormonal imbalance in plants, resulting in abnormal growth. We sequenced and compared the genomes of 20 isolates of
Rhodococcus to gain insights into the mechanisms and evolution of virulence in these bacteria. Horizontal gene transfer was
identified as critical but limited in the scale of virulence evolution, as few loci are conserved and exclusive to
phytopathogenic isolates. Although the fas operon is present in most phytopathogenic isolates, it is absent from
phytopathogenic isolate A21d2. Instead, this isolate has a horizontally acquired gene chimera that encodes a novel fusion
protein with isopentyltransferase and phosphoribohydrolase domains, predicted to be capable of catalyzing and activating
cytokinins, respectively. Cytokinin profiling of the archetypal D188 isolate revealed only one activate cytokinin type that was
specifically synthesized in a fas-dependent manner. These results suggest that only the isopentenyladenine cytokinin type is
synthesized and necessary for Rhodococcus phytopathogenicity, which is not consistent with the extant model stating that a
mixture of cytokinins is necessary for Rhodococcus to cause leafy gall symptoms. In all, data indicate that only four
horizontally acquired functions are sufficient to confer the trait of phytopathogenicity to members of the genetically diverse
clade of Rhodococcus
The physical traits and fatty acids profile of ostrich meat enriched in n3 fatty acids as influenced by duration of refrigerated storage and type of packaging
The aim of the study was to evaluate physical traits and fatty acids profile of ostrich meat enriched in n3 fatty acids as affected by refrigerated storage (for 14 days) and type of packaging (VAC vs. skin-packaging - SP). During refrigerated storage time drip loss after 7 days was significantly (P<0.001) higher in VAC as compared to SP samples. No significant differences in the SFA content in meat during storage in both types of packaging types recorded. Although there were no significant differences (P=0.067), a tendency for higher MUFA values was observed during storage in VAC packed meat. A significant decrease (P<0.05) in the content of PUFA after 7 and 14 days of storage was also observed in VAC packed meat as compared to fresh meat, whereas, when skin packaging was used, no differences in the PUFA concentration were found. Considering this, the SP can be recommended packaging for ostrich meat industry
Analysis of genome sequences from plant pathogenic rhodococcus reveals genetic novelties in virulence Loci.
Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus, some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with the fas operon central to virulence. The Fas proteins synthesize, modify, and activate a mixture of growth regulating cytokinins, which cause a hormonal imbalance in plants, resulting in abnormal growth. We sequenced and compared the genomes of 20 isolates of Rhodococcus to gain insights into the mechanisms and evolution of virulence in these bacteria. Horizontal gene transfer was identified as critical but limited in the scale of virulence evolution, as few loci are conserved and exclusive to phytopathogenic isolates. Although the fas operon is present in most phytopathogenic isolates, it is absent from phytopathogenic isolate A21d2. Instead, this isolate has a horizontally acquired gene chimera that encodes a novel fusion protein with isopentyltransferase and phosphoribohydrolase domains, predicted to be capable of catalyzing and activating cytokinins, respectively. Cytokinin profiling of the archetypal D188 isolate revealed only one activate cytokinin type that was specifically synthesized in a fas-dependent manner. These results suggest that only the isopentenyladenine cytokinin type is synthesized and necessary for Rhodococcus phytopathogenicity, which is not consistent with the extant model stating that a mixture of cytokinins is necessary for Rhodococcus to cause leafy gall symptoms. In all, data indicate that only four horizontally acquired functions are sufficient to confer the trait of phytopathogenicity to members of the genetically diverse clade of Rhodococcus.Journal ArticleSCOPUS: ar.jinfo:eu-repo/semantics/publishe
Recommended from our members
dataset_files.zip
We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was used to automate the annotation of the genome sequences. The genome sequences, genbank files, and nucleotide and amino acid sequences for the predicted coding sequences are provided
Recommended from our members
Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci
We report the sequence and characterization of the genomes of 21 isolates of Rhodococcus. Next generation sequencing technology was used to generate genome sequences. The reads for each genome were de novo assembled. The contigs were re-ordered, using the genome sequence of A44a as a reference. The program, Prokka, was used to automate the annotation of the genome sequences. The genome sequences, genbank files, and nucleotide and amino acid sequences for the predicted coding sequences are provided
Recommended from our members
CreasonAllisonBotanyPlantPathologyAnalysisGenomeSequences.pdf
Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus,
some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model
predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with the fas operon central
to virulence. The Fas proteins synthesize, modify, and activate a mixture of growth regulating cytokinins, which cause a
hormonal imbalance in plants, resulting in abnormal growth. We sequenced and compared the genomes of 20 isolates of
Rhodococcus to gain insights into the mechanisms and evolution of virulence in these bacteria. Horizontal gene transfer was
identified as critical but limited in the scale of virulence evolution, as few loci are conserved and exclusive to
phytopathogenic isolates. Although the fas operon is present in most phytopathogenic isolates, it is absent from
phytopathogenic isolate A21d2. Instead, this isolate has a horizontally acquired gene chimera that encodes a novel fusion
protein with isopentyltransferase and phosphoribohydrolase domains, predicted to be capable of catalyzing and activating
cytokinins, respectively. Cytokinin profiling of the archetypal D188 isolate revealed only one activate cytokinin type that was
specifically synthesized in a fas-dependent manner. These results suggest that only the isopentenyladenine cytokinin type is
synthesized and necessary for Rhodococcus phytopathogenicity, which is not consistent with the extant model stating that a
mixture of cytokinins is necessary for Rhodococcus to cause leafy gall symptoms. In all, data indicate that only four
horizontally acquired functions are sufficient to confer the trait of phytopathogenicity to members of the genetically diverse
clade of Rhodococcus
Recommended from our members
CreasonAllisonBotanyPlantPathologyAnalysisGenomeSequences_SupportingInformation.zip
Members of Gram-positive Actinobacteria cause economically important diseases to plants. Within the Rhodococcus genus,
some members can cause growth deformities and persist as pathogens on a wide range of host plants. The current model
predicts that phytopathogenic isolates require a cluster of three loci present on a linear plasmid, with the fas operon central
to virulence. The Fas proteins synthesize, modify, and activate a mixture of growth regulating cytokinins, which cause a
hormonal imbalance in plants, resulting in abnormal growth. We sequenced and compared the genomes of 20 isolates of
Rhodococcus to gain insights into the mechanisms and evolution of virulence in these bacteria. Horizontal gene transfer was
identified as critical but limited in the scale of virulence evolution, as few loci are conserved and exclusive to
phytopathogenic isolates. Although the fas operon is present in most phytopathogenic isolates, it is absent from
phytopathogenic isolate A21d2. Instead, this isolate has a horizontally acquired gene chimera that encodes a novel fusion
protein with isopentyltransferase and phosphoribohydrolase domains, predicted to be capable of catalyzing and activating
cytokinins, respectively. Cytokinin profiling of the archetypal D188 isolate revealed only one activate cytokinin type that was
specifically synthesized in a fas-dependent manner. These results suggest that only the isopentenyladenine cytokinin type is
synthesized and necessary for Rhodococcus phytopathogenicity, which is not consistent with the extant model stating that a
mixture of cytokinins is necessary for Rhodococcus to cause leafy gall symptoms. In all, data indicate that only four
horizontally acquired functions are sufficient to confer the trait of phytopathogenicity to members of the genetically diverse
clade of Rhodococcus