Interspecific competition underlying mutualistic networks

The architecture of bipartite networks linking two classes of constituents is affected by the interactions within each class. For the bipartite networks representing the mutualistic relationship between pollinating animals and plants, it has been known that their degree distributions are broad but often deviate from power-law form, more significantly for plants than animals. Here we consider a model for the evolution of the mutualistic networks and find that their topology is strongly dependent on the asymmetry and non-linearity of the preferential selection of mutualistic partners. Real-world mutualistic networks analyzed in the framework of the model show that a new animal species determines its partners not only by their attractiveness but also as a result of the competition with pre-existing animals, which leads to the stretched-exponential degree distributions of plant species.Comment: 5 pages, 3 figures, accepted version in PR

Mechanisms of estradiol in fear circuitry: implications for sex differences in psychopathology

Over the past two decades, substantial knowledge has been attained about the mechanisms underlying the acquisition and subsequent extinction of conditioned fear. Knowledge gained on the biological basis of Pavlovian conditioning has led to the general acceptance that fear extinction may be a useful model in understanding the underlying mechanisms in the pathophysiology of anxiety disorders and may also be a good model for current therapies treating these disorders. Lacking in the current knowledge is how men and women may or may not differ in the biology of fear and its extinction. It is also unclear how the neural correlates of fear extinction may mediate sex differences in the etiology, maintenance, and prevalence of psychiatric disorders. In this review, we begin by highlighting the epidemiological differences in incidence rate. We then discuss how estradiol (E2), a primary gonadal hormone, may modulate the mechanisms of fear extinction and mediate some of the sex differences observed in psychiatric disorders

Observational Evidence of EHP Effects on the Melting of Snowpack over the Tibetan Plateau

Observational evidences are presented showing that the Indo-Gangetic Plain (IGP) regions, bounded by the high altitude Himalayan mountains, are subject to heavy loading of absorbing aerosols, i.e., black carbon and dust, which can lead to widespread enhancement warming over the Tibetan Plateau and accelerated snowmelt in the western Tibetan Plateau (WTP) and Himalayas. The two pre-monsoon seasons of 2004 and 2005 were strikingly contrasting in terms of the aerosol loading over IGP. The warming of the TP in 2004 relative to 2005 was widespread, covering most of the WTP and Himalayas. This warming is closely linked to patterns of the snow melt. Consistent with the Elevated Heat Pump hypothesis, we find that increased loading of absorbing aerosols over IGP in the pre-monsoon season is associated with increased heating of the upper troposphere by dynamical feedback induced by aerosol heating, and enhances the rate of snowmelt over Himalayas and the WTP in April-May. Composite analysis with more contrasting years also shows that the heating of the troposphere by elevated dust and black carbon aerosols in the boreal spring can lead to widespread enhanced land-atmosphere warming, and accelerated snow melt in the Himalayas and Tibetan Plateau

Changes in the Intensity and Frequency of Atmospheric Blocking and Associated Heat Waves During Northern Summer Over Eurasia in the CMIP5 Model Simulations

The Russia heat wave and wild fires of the summer of 2010 was the most extreme weather event in the history of the country. Studies show that the root cause of the 2010 Russia heat wave/wild fires was an atmospheric blocking event which started to develop at the end of June and peaked around late July and early August. Atmospheric blocking in the summer of 2010 was anomalous in terms of the size, duration, and the location, which shifted to the east from the normal location. This and other similar continental scale severe summertime heat waves and blocking events in recent years have raised the question of whether such events are occurring more frequently and with higher intensity in a warmer climate induced by greenhouse gases. We studied the spatial and temporal distributions of the occurrence and intensity of atmospheric blocking and associated heat waves for northern summer over Eurasia based on CMIPS model simulations. To examine the global warming induced change of atmospheric blocking and heat waves, experiments for a high emissions scenario (RCP8.S) and a medium mitigation scenario (RCP4.S) are compared to the 20th century simulations (historical). Most models simulate the mean distributions of blockings reasonably well, including major blocking centers over Eurasia, northern Pacific, and northern Atlantic. However, the models tend to underestimate the number of blockings compared to MERRA and NCEPIDOE reanalysis, especially in western Siberia. Models also reproduced associated heat waves in terms of the shifting in the probability distribution function of near surface temperature. Seven out of eight models used in this study show that the frequency of atmospheric blocking over the Europe will likely decrease in a warmer climate, but slightly increase over the western Siberia. This spatial pattern resembles the blocking in the summer of 2010, indicating the possibility of more frequent occurrences of heat waves in western Siberia. In this talk, we will also discuss the potential effect of atmosphere-land feedback, particularly how the wetter spring affects the frequency and intensity of atmospheric blocking and heat wave during summer

Strategies for developing and optimizing cancer vaccines [version 1; peer review: 2 approved]

With the spotlight on cancer immunotherapy and the expanding use of immune checkpoint inhibitors, strategies to improve the response rate and duration of current cancer immunotherapeutics are highly sought. In that sense, investigators around the globe have been putting spurs on the development of effective cancer vaccines in humans after decades of efforts that led to limited clinical success. In more than three decades of research in pursuit of targeted and personalized immunotherapy, several platforms have been incorporated into the list of cancer vaccines from live viral or bacterial agents harboring antigens to synthetic peptides with the hope of stronger and durable immune responses that will tackle cancers better. Unlike adoptive cell therapy, cancer vaccines can take advantage of using a patient’s entire immune system that can include more than engineered receptors or ligands in developing antigen-specific responses. Advances in molecular technology also secured the use of genetically modified genes or proteins of interest to enhance the chance of stronger immune responses. The formulation of vaccines to increase chances of immune recognition such as nanoparticles for peptide delivery is another area of great interest. Studies indicate that cancer vaccines alone may elicit tumor-specific cellular or humoral responses in immunologic assays and even regression or shrinkage of the cancer in select trials, but novel strategies, especially in combination with other cancer therapies, are under study and are likely to be critical to achieve and optimize reliable objective responses and survival benefit. In this review, cancer vaccine platforms with different approaches to deliver tumor antigens and boost immunity are discussed with the intention of summarizing what we know and what we need to improve in the clinical trial setting

Vein to vein: exploring blood supply chains in Canada

There is not yet any substitute for human blood which remains a scarce resource in many countries. Effective and efficient management of blood supply chains (BSCs) is utmost important in the healthcare industry. This paper gives an overview of the BSC and how blood products are used at hospitals to provide life-saving services to patients. Factoring in the blood types and their receipt compatibility, a simple inventory model is proposed. Using secondary data, the model is illustrated by way of a small case study in Nova Scotia, Canada. We highlight that due to both demand and supply uncertainties, and due to its perishable nature, inventorying blood products is not straightforward and brings with it many logistical and management challenges in the BSC

Atmospheric Teleconnection over Eurasia Induced by Aerosol Radiative Forcing During Boreal Spring

The direct effects of aerosols on global and regional climate during boreal spring are investigated based on simulations using the NASA Global Modeling and Assimilation Office (GMAO) finite-volume general circulation model (fvGCM) with Microphyics of clouds in Relaxed Arakawa Schubert Scheme (McRAS). The aerosol loading are prescribed from three-dimensional monthly distribution of tropospheric aerosols viz., sulfate, black carbon, organic carbon, soil dust, and sea salt from output of the Goddard Ozone Chemistry Aerosol Radiation and Transport model (GOCART). The aerosol extinction coefficient, single scattering albedo, and asymmetric factor are computed as wavelength-dependent radiative forcing in the radiative transfer scheme of the fvGCM, and as a function of the aerosol loading and ambient relative humidity. We find that anomalous atmospheric heat sources induced by absorbing aerosols (dust and black carbon) excites a planetary scale teleconnection pattern in sea level pressure, temperature and geopotential height spanning North Africa through Eurasia to the North Pacific. Surface cooling due to direct effects of aerosols is found in the vicinity and downstream of the aerosol source regions, i.e., South Asia, East Asia, and northern and western Africa. Additionally, atmospheric heating is found in regions with large loading of dust (over Northern Africa, and Middle East), and black carbon (over South-East Asia). Paradoxically, the most pronounced feature in aerosol-induced surface temperature is an east-west dipole anomaly with strong cooling over the Caspian Sea, and warming over central and northeastern Asia, where aerosol concentration are low. Analyses of circulation anomalies show that the dipole anomaly is a part of an atmospheric teleconnection driven by atmospheric heating anomalies induced by absorbing aerosols in the source regions, but the influence was conveyed globally through barotropic energy dispersion and sustained by feedback processes associated with the regional circulations

Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish

Transposable elements (TEs) encode regulatory elements that impact gene expression in multiple species, yet a comprehensive analysis of zebrafish TEs in the context of gene regulation is lacking. Here, we systematically investigate the epigenomic and transcriptomic landscape of TEs across 11 adult zebrafish tissues using multidimensional sequencing data. We find that TEs contribute substantially to a diverse array of regulatory elements in the zebrafish genome and that 37% of TEs are positioned in active regulatory states in adult zebrafish tissues. We identify TE subfamilies enriched in highly specific regulatory elements among different tissues. We use transcript assembly to discover TE-derived transcriptional units expressed across tissues. Finally, we show that novel TE-derived promoters can initiate tissue-specific transcription of alternate gene isoforms. This work provides a comprehensive profile of TE activity across normal zebrafish tissues, shedding light on mechanisms underlying the regulation of gene expression in this widely used model organism

Molecular and cytological features of the mouse B-cell lymphoma line iMyc(Eμ)-1

BACKGROUND: Myc-induced lymphoblastic B-cell lymphoma (LBL) in iMyc(Eμ )mice may provide a model system for the study of the mechanism by which human MYC facilitates the initiation and progression of B cell and plasma cell neoplasms in human beings. We have recently shown that gene-targeted iMyc(Eμ )mice that carry a His(6)-tagged mouse Myc cDNA, Myc(His), just 5' of the immunoglobulin heavy-chain enhancer, Eμ, are prone to B cell and plasma cell tumors. The predominant tumor (~50%) that arose in the iMyc(Eμ )mice on the mixed genetic background of segregating C57BL/6 and 129/SvJ alleles was LBL. The purpose of this study was to establish and characterize a cell line, designated iMyc(Eμ)-1, for the in-depth evaluation of LBL in vitro. METHODS: The morphological features and the surface marker expression profile of the iMyc(Eμ)-1 cells were evaluated using cytological methods and FACS, respectively. The cytogenetic make-up of the iMyc(Eμ)-1 cells was assessed by spectral karyotyping (SKY). The expression of the inserted Myc(His )gene was determined using RT-PCR and qPCR. Clonotypic immunoglobulin gene arrangements were detected by Southern blotting. The global gene expression program of the iMyc(Eμ)-1 cells and the expression of 768 "pathway" genes were determined with the help of the Mouse Lymphochip(© )and Superarray(© )cDNA micro- and macroarrays, respectively. Array results were verified, in part, by RT-PCR and qPCR. RESULTS: Consistent with their derivation from LBL, the iMyc(Eμ)-1 cells were found to be neoplastic IgM(high)IgD(low )lymphoblasts that expressed typical B-cell surface markers including CD40, CD54 (ICAM-1), CD80 (B7-1) and CD86 (B7-2). The iMyc(Eμ)-1 cells harbored a reciprocal T(9;11) and three non-reciprocal chromosomal translocations, over-expressed Myc(His )at the expense of normal Myc, and exhibited gene expression changes on Mouse Lymphochip(© )microarrays that were consistent with Myc(His)-driven B-cell neoplasia. Upon comparison to normal B cells using eight different Superarray(© )cDNA macroarrays, the iMyc(Eμ)-1 cells showed the highest number of changes on the NFκB array. CONCLUSION: The iMyc(Eμ)-1 cells may provide a uniquely useful model system to study the growth and survival requirements of Myc-driven mouse LBL in vitro