Relaxation oscillations in a class of delay-differential equations.

We study a class of delay differential equations which have been used to model hematological stem cell regulation and dynamics. Under certain circumstances the model exhibits self-sustained oscillations, with periods which can be significantly longer than the basic cell cycle time. We show that the long periods in the oscillations occur when the cell generation rate is small, and we provide an asymptotic analysis of the model in this case. This analysis bears a close resemblance to the analysis of relaxation oscillators (such as the Van der Pol oscillator), except that in our case the slow manifold is infinite dimensional. Despite this, a fairly complete analysis of the problem is possible

Dynamic behavior of stochastic gene expression models in the presence of bursting

This paper considers the behavior of discrete and continuous mathematical models for gene expression in the presence of transcriptional/translational bursting. We treat this problem in generality with respect to the distribution of the burst size as well as the frequency of bursting, and our results are applicable to both inducible and repressible expression patterns in prokaryotes and eukaryotes. We have given numerous examples of the applicability of our results, especially in the experimentally observed situation that burst size is geometrically or exponentially distributed.Comment: 22 page

The relationship between membrane damage, release of protein and loss of viability in Escherichia coli exposed to high hydrostatic pressure

The aim of this work was to examine a possible association between resistance of two Escherichia coli strains to high hydrostatic pressure and the susceptibility of their cell membranes to pressure-induced damage. Cells were exposed to pressures between 100 and 700 MPa at room temperature (~20C) in phosphate-buffered-saline. In the more pressure-sensitive strain E. coli 8164, loss of viability occurred at pressures between 100 MPa and 300 MPa and coincided with irreversible loss of membrane integrity as indicated by uptake of propidium iodide (PI) and leakage of protein of molecular mass between 9 and 78 kDa from the cells. Protein release increased to a maximum at 400 MPa then decreased, possibly due to intracellular aggregation at the higher pressures. In the pressure-resistant strain E. coli J1, PI was taken up during pressure treatment but not after decompression indicating that cells were able to reseal their membranes. Loss of viability in strain J1 coincided with the transient loss of membrane integrity between approximately 200 MPa and 600 MPa. In E. coli J1 leakage of protein occurred before loss of viability and the released protein was of low molecular mass, between 8 and 11 kDa and may have been of periplasmic origin. In these two strains differences in pressure resistance appeared to be related to differences in the ability of their membranes to withstand disruption by pressure. However it appears that transient loss of membrane integrity during pressure can lead to cell death irrespective of whether cells can reseal their membranes afterwards

The effect of stellar-mass black holes on the structural evolution of massive star clusters

We present the results of realistic N-body modelling of massive star clusters in the Magellanic Clouds, aimed at investigating a dynamical origin for the radius-age trend observed in these systems. We find that stellar-mass black holes, formed in the supernova explosions of the most massive cluster stars, can constitute a dynamically important population. If a significant number of black holes are retained (here we assume complete retention), these objects rapidly form a dense core where interactions are common, resulting in the scattering of black holes into the cluster halo, and the ejection of black holes from the cluster. These two processes heat the stellar component, resulting in prolonged core expansion of a magnitude matching the observations. Significant core evolution is also observed in Magellanic Cloud clusters at early times. We find that this does not result from the action of black holes, but can be reproduced by the effects of mass-loss due to rapid stellar evolution in a primordially mass segregated cluster.Comment: Accepted for publication in MNRAS Letters; 2 figures, 1 tabl

What measurable zero point fluctuations can(not) tell us about dark energy

We show that laboratory experiments cannot measure the absolute value of dark energy. All known experiments rely on electromagnetic interactions. They are thus insensitive to particles and fields that interact only weakly with ordinary matter. In addition, Josephson junction experiments only measure differences in vacuum energy similar to Casimir force measurements. Gravity, however, couples to the absolute value. Finally we note that Casimir force measurements have tested zero point fluctuations up to energies of ~10 eV, well above the dark energy scale of ~0.01 eV. Hence, the proposed cut-off in the fluctuation spectrum is ruled out experimentally.Comment: 4 page

An augmented moment method for stochastic ensembles with delayed couplings: I. Langevin model

By employing a semi-analytical dynamical mean-field approximation theory previously proposed by the author [H. Hasegawa, Phys. Rev. E {\bf 67}, 041903 (2003)], we have developed an augmented moment method (AMM) in order to discuss dynamics of an $N$-unit ensemble described by linear and nonlinear Langevin equations with delays. In AMM, original $N$-dimensional {\it stochastic} delay differential equations (SDDEs) are transformed to infinite-dimensional {\it deterministic} DEs for means and correlations of local as well as global variables. Infinite-order DEs arising from the non-Markovian property of SDDE, are terminated at the finite level $m$ in the level-$m$ AMM (AMM$m$), which yields $(3+m)$-dimensional deterministic DEs. Model calculations have been made for linear and nonlinear Langevin models. The stationary solution of AMM for the linear Langevin model with N=1 is nicely compared to the exact result. The synchronization induced by an applied single spike is shown to be enhanced in the nonlinear Langevin ensemble with model parameters locating at the transition between oscillating and non-oscillating states. Results calculated by AMM6 are in good agreement with those obtained by direct simulations.Comment: 18 pages, 3 figures, changed the title with re-arranged figures, accepted in Phys. Rev. E with some change

Everything I need to know I learned at college : an honors thesis (HONRS 499)

As a freshman, I had a difficult time adjusting to life on my own. It was in those first months I began to think about what I could do for my thesis. I wanted to create some kind of "Welcome to Ball State" paper that might help others get over those "freshmen jitters." The following manuscript is a hodgepodge of information that I have found useful here. In writing my thesis, I have been able to reminisce about the good and the bad times, and I truly believe that everything I need to know I learned at college.I am providing a copy of my thesis to the office of Admissions. Hopefully, they will be able to use some of the information in presentations to future Ball State students.Honors CollegeThesis (B.A.