Rewriting System for Profile-Guided Data Layout Transformations on Binaries

International audienceCareful data layout design is crucial for achieving high performance. However exploring data layouts is time-consuming and error-prone, and assessing the impact of a layout transformation on performance is difficult without performing it. We propose to guide application programmers through data layout restructuring by providing a comprehensive multidimensional description of the initial layout, built from trace analysis, and then by giving a performance evaluation of the transformations tested and an expression of each transformed layout. The programmer can limit the exploration to layouts matching some patterns. We apply this method to two multithreaded applications. The performance prediction of multiple transformations matches within 5% the performance of hand-transformed layout code

The Integrative Taxonomic Approach Reveals Host Specific Species in an Encyrtid Parasitoid Species Complex

Integrated taxonomy uses evidence from a number of different character types to delimit species and other natural groupings. While this approach has been advocated recently, and should be of particular utility in the case of diminutive insect parasitoids, there are relatively few examples of its application in these taxa. Here, we use an integrated framework to delimit independent lineages in Encyrtus sasakii (Hymenoptera: Chalcidoidea: Encyrtidae), a parasitoid morphospecies previously considered a host generalist. Sequence variation at the DNA barcode (cytochrome c oxidase I, COI) and nuclear 28S rDNA loci were compared to morphometric recordings and mating compatibility tests, among samples of this species complex collected from its four scale insect hosts, covering a broad geographic range of northern and central China. Our results reveal that Encyrtus sasakii comprises three lineages that, while sharing a similar morphology, are highly divergent at the molecular level. At the barcode locus, the median K2P molecular distance between individuals from three primary populations was found to be 11.3%, well outside the divergence usually observed between Chalcidoidea conspecifics (0.5%). Corroborative evidence that the genetic lineages represent independent species was found from mating tests, where compatibility was observed only within populations, and morphometric analysis, which found that despite apparent morphological homogeneity, populations clustered according to forewing shape. The independent lineages defined by the integrated analysis correspond to the three scale insect hosts, suggesting the presence of host specific cryptic species. The finding of hidden host specificity in this species complex demonstrates the critical role that DNA barcoding will increasingly play in revealing hidden biodiversity in taxa that present difficulties for traditional taxonomic approaches

NANDFlashSim: High-fidelity, microarchitecture-aware NAND flash memory simulation

As the popularity of NAND flash expands in arenas from embedded systems to high-performance computing, a high-fidelity understanding of its specific properties becomes increasingly important. Further, with the increasing trend toward multiple-die, multiple-plane architectures and high-speed interfaces, flash memory systems are expected to continue to scale and cheapen, resulting in their broader proliferation. However, when designing NAND-based devices, making decisions about the optimal system configuration is nontrivial, because flash is sensitive to a number of parameters and suffers from inherent latency variations, and no available tools suffice for studying these nuances. The parameters include the architectures, such as multidie and multiplane, diverse node technologies, bit densities, and cell reliabilities. Therefore, we introduce NANDFlashSim, a high-fidelity, latency-variation-aware, and highly configurable NAND-flash simulator, which implements a detailed timing model for 16 state-of-the-art NAND operations. Using NANDFlashSim, we notably discover the following. First, regardless of the operation, reads fail to leverage internal parallelism. Second, MLC provides lower I/O bus contention than SLC, but contention becomes a serious problem as the number of dies increases. Third, many-die architectures outperform many-plane architectures for disk-friendly workloads. Finally, employing a high-performance I/O bus or an increased page size does not enhance energy savings. Our simulator is available at http://nfs.camelab.org

Evaluation of oxidant, antioxidant, and S100B levels in patients with conversion disorder

Hasan Büyükaslan,1 Sultan Basmacı Kandemir,2 Mehmet Asoğlu,3 Halil Kaya,4 Mehmet Tahir Gökdemir,1 İbrahim Fatih Karababa,3 Fatih Güngörmez,5 Fethiye Kılıçaslan,6 Emin Şavik7 1Department of Emergency Medicine, Faculty of Medicine, Harran University, 2Department of Psychiatry, Balıklıgöl State Hospital, 3Department of Psychiatry, Faculty of Medicine, Harran University, Sanliurfa, 4Bursa Yüksek Ihtisas Training and Research Hospital, Bursa, 5Department of Emergency Medicine, Mehmet Akif İnan Research Hospital, 6Department of Child and Adolescent Psychiatry, 7Department of Biochemistry, Faculty of Medicine, Harran University, Sanliurfa, Turkey Introduction: Various psychodynamic, neurobiological, genetic, and sociocultural factors are believed to be involved in the etiology of conversion disorder (CD). Oxidative metabolism has been shown to deteriorate in association with many health problems and psychiatric disorders. We evaluated oxidative metabolism and S100B levels in the context of this multifactorial disease.Methods: Thirty-seven patients with CD (25 females and 12 males) and 42 healthy volunteers (21 females and 21 males), all matched for age and sex, were included in this study. The total oxidant status, total antioxidant status, oxidative stress index, and S100B levels were compared between the two groups.Results: The total oxidant status, oxidative stress index, and S100B levels were significantly higher in patients with CD than in the control group, whereas the total antioxidant status was significantly lower.Conclusion: CD is associated with deterioration of oxidative metabolism and increased neuronal damage. Keywords: conversion disorder, oxidative stress, S100