Direct numerical simulation of supersonic turbulent flows over rough surfaces

We perform direct numerical simulation of supersonic turbulent channel flow over cubical roughness elements, spanning bulk Mach numbers -, both in the transitional and fully rough regime. We propose a novel definition of roughness Reynolds number which is able to account for the viscosity variations at the roughness crest and should be used to compare rough-wall flows across different Mach numbers. As in the incompressible flow regime, the mean velocity profile shows a downward shift with respect to the baseline smooth wall cases, however, the magnitude of this velocity deficit is largely affected by the Mach number. Compressibility transformations are able to account for this effect, and data show a very good agreement with the incompressible fully rough asymptote, when the relevant roughness Reynolds number is used. Velocity statistics present outer layer similarity with the equivalent smooth wall cases, however, this does not hold for the thermal field, which is substantially affected by the roughness, even in the channel core. We show that this is a direct consequence of the quadratic temperature-velocity relation which is also valid for rough walls. Analysis of the heat transfer shows that the relative drag increase is always larger than the relative heat transfer enhancement, however, increasing the Mach number brings data closer to the Reynolds analogy line due to the rising relevance of the aerodynamic heating

STREAmS: A high-fidelity accelerated solver for direct numerical simulation of compressible turbulent flows

We present STREAmS, an in-house high-fidelity solver for direct numerical simulations (DNS) of canonical compressible wall-bounded flows, namely turbulent plane channel, zero-pressure gradient turbulent boundary layer and supersonic oblique shock-wave/boundary layer interaction. The solver incorporates state-of-the-art numerical algorithms, specifically designed to cope with the challenging problems associated with the solution of high-speed turbulent flows and can be used across a wide range of Mach numbers, extending from the low subsonic up to the hypersonic regime. From the computational viewpoint, STREAmS is oriented to modern HPC platforms thanks to MPI parallelization and the ability to run on multi-GPU architectures. This paper discusses the main implementation strategies, with particular reference to the CUDA paradigm, the management of a single code for traditional and multi-GPU architectures, and the optimization process to take advantage of the latest generation of NVIDIA GPUs. Performance measurements show that single-GPU optimization more than halves the computing time as compared to the baseline version. At the same time, the asynchronous patterns implemented in STREAmS for MPI communications guarantee very good parallel performance especially in the weak scaling spirit, with efficiency exceeding 97% on 1024 GPUs. For overall evaluation of STREAmS with respect to other compressible solvers, comparison with a recent GPU-enabled community solver is presented. It turns out that, although STREAmS is much more limited in terms of flow configurations that can be addressed, the advantage in terms of accuracy, computing time and memory occupation is substantial, which makes it an ideal candidate for large-scale simulations of high-Reynolds number, compressible wall-bounded turbulent flows. The solver is released open source under GPLv3 license. Program summary: Program Title: STREAmS CPC Library link to program files: https://doi.org/10.17632/hdcgjpzr3y.1 Developer's repository link: https://github.com/matteobernardini/STREAmS Code Ocean capsule: https://codeocean.com/capsule/8931507/tree/v2 Licensing provisions: GPLv3 Programming language: Fortran 90, CUDA Fortran, MPI Nature of problem: Solving the three-dimensional compressible Navier–Stokes equations for low and high Mach regimes in a Cartesian domain configured for channel, boundary layer or shock-boundary layer interaction flows. Solution method: The convective terms are discretized using a hybrid energy-conservative shock-capturing scheme in locally conservative form. Shock-capturing capabilities rely on the use of Lax–Friedrichs flux vector splitting and weighted essentially non-oscillatory (WENO) reconstruction. The system is advanced in time using a three-stage, third-order RK scheme. Two-dimensional pencil distributed MPI parallelization is implemented alongside different patterns of GPU (CUDA Fortran) accelerated routines

Chronic, Lethal Versus Acute, Non-lethal Threats: A Look inside the Memories of Cancer Patients at the Time of Their Diagnosis

Consequentiality, affect, and rehearsal are also important components that help contribute to the recall of autobiographical memories. Traditionally, these features have been assessed in public dramatic events in the past such as the Challenger explosion and the 9/11 terrorist attack. In opposition to these traditionally studied events, the present study examined the effects of these features on five different private events. An analysis of these different experiences was assessed to determine the role of consequentiality, affect, and rehearsal play on memory recall. These three components were assessed in five different events during different points of the lifetime. Adults diagnosed with a cancer diagnosis (N = 44) were examined and compared to adults who heard about their child’s injury (N = 63, Hillman et al., 2010), adults who viewed their child’s injury (N = 37 Hillman et al., 2010), adults who experienced a car accident (N = 74, Shaneyfelt, Minor, & Bohannon, 2008), and adults who experienced an injury during their childhood (N = 109, Hillman et al., 2010). All of these events were measures with a two part survey that consisted of a free recall narrative of the event and a detailed series of proved questions which included ratings of vividness, affect, and an estimate of rehearsals. Cancer diagnosis memories yielded the highest memory detail and recounts, but the lowest vividness ratings. This finding sheds light on how the method of information input plays different roles in both memory quality and quantity

Dissociation of CH Species on Ni(111):A HREELS Study

The isothermal dissociation rate of CCH and CH on Ni(111) was measured by following, with HREEL spectroscopy, the intensity of the CH stretching peak as a function of time. By repeating the experiment at several different temperatures we obtained an activation energy of 8±3 kcal/mol for the CCH dissociation reaction and of 12±3 kcal/mol for the CH dissociation reaction. Pre-exponential factors were found to be 10^3±1 s-1 in both cases. Independent thermal desorption spectra show a feature at 470 K and a tail extending up to 600 K which can be assigned to the CCH dissociation and the CH dissociation respectively. The two experiments are quantitatively consistent

Correction of systematic errors in scanning tunnelling spectra on semiconductor surfaces: the energy gap of Si(111)-7x7 at 0.3 K

The investigation of the electronic properties of semiconductor surfaces using scanning tunnelling spectroscopy (STS) is often hindered by non-equilibrium transport of the injected charge carriers. We propose a correction method for the resulting systematic errors in STS data, which is demonstrated for the well known Si(111)-(7x7) surface. The surface has an odd number of electrons per surface unit cell and is metallic above 20 K. We observe an energy gap in the ground state of this surface by STS at 0.3 K. After correction, the measured width of the gap is (70 +- 15) meV which is compatible with previous less precise estimates. No sharp peak of the density of states at the Fermi level is observed, in contrast to proposed models for the Si(111)-(7x7) surface.Comment: 10 pages, 4 figure

In vitro and in vivo inhibition of breast cancer cell growth by targeting the Hedgehog/GLI pathway with SMO (GDC-0449) or GLI (GANT-61) inhibitors.

Aberrant Hedgehog (Hh)/glioma-associated oncogene (GLI) signaling has been implicated in cancer progression. Here, we analyzed GLI1, Sonic Hedgehog (Shh) and NF-κB expression in 51 breast cancer (ductal carcinoma) tissues using immunohistochemistry. We found a positive correlation between nuclear GLI1 expression and tumor grade in ductal carcinoma cases. Cytoplasmic Shh staining significantly correlated with a lower tumor grade. Next, the in vitro effects of two Hh signaling pathway inhibitors on breast cancer cell lines were evaluated using the Smoothened (SMO) antagonist GDC-0449 and the direct GLI1 inhibitor GANT-61. GDC-0449 and GANT-61 exhibited the following effects: a) inhibited breast cancer cell survival; b) induced apoptosis; c) inhibited Hh pathway activity by decreasing the mRNA expression levels of GLI1 and Ptch and inhibiting the nuclear translocation of GLI1; d) increased/decreased EGFR and ErbB2 protein expression, reduced p21- Ras and ERK1/ERK2 MAPK activities and inhibited AKT activation; and e) decreased the nuclear translocation of NF-κB. However, GANT-61 exerted these effects more effectively than GDC-0449. The in vivo antitumor activities of GDC-0449 and GANT- 61 were analyzed in BALB/c mice that were subcutaneously inoculated with mouse breast cancer (TUBO) cells. GDC-0449 and GANT-61 suppressed tumor growth of TUBO cells in BALB/c mice to different extents. These findings suggest that targeting the Hh pathway using antagonists that act downstream of SMO is a more efficient strategy than using antagonists that act upstream of SMO for interrupting Hh signaling in breast cancer

In vitro and in vivo antitumoral effects of combinations of polyphenols, or polyphenols and anticancer drugs: Perspectives on cancer treatment

Carcinogenesis is a multistep process triggered by genetic alterations that activate different signal transduction pathways and cause the progressive transformation of a normal cell into a cancer cell. Polyphenols, compounds ubiquitously expressed in plants, have anti-inflammatory, antimicrobial, antiviral, anticancer, and immunomodulatory properties, all of which are beneficial to human health. Due to their ability to modulate the activity of multiple targets involved in carcinogenesis through direct interaction or modulation of gene expression, polyphenols can be employed to inhibit the growth of cancer cells. However, the main problem related to the use of polyphenols as anticancer agents is their poor bioavailability, which might hinder the in vivo effects of the single compound. In fact, polyphenols have a poor absorption and biodistribution, but also a fast metabolism and excretion in the human body. The poor bioavailability of a polyphenol will affect the effective dose delivered to cancer cells. One way to counteract this drawback could be combination treatment with different polyphenols or with polyphenols and other anti-cancer drugs, which can lead to more effective antitumor effects than treatment using only one of the compounds. This report reviews current knowledge on the anticancer effects of combinations of polyphenols or polyphenols and anticancer drugs, with a focus on their ability to modulate multiple signaling transduction pathways involved in cancer