Substrate specificity of a long-chain alkylamine-degrading Pseudomonas sp isolated from activated sludge

A bacterium strain BERT, which utilizes primary long-chain alkylamines as nitrogen, carbon and energy source, was isolated from activated sludge. This rod-shaped motile, Gram-negative strain was identified as a Pseudomonas sp. The substrate spectrum of this Pseudomonas strain BERT includes primary alkylamines with alkyl chains ranging from C3 to C18, and dodecyl-1,3-diaminopropane. Amines with alkyl chains ranging from 8 to 14 carbons were the preferred substrates. Growth on dodecanal, dodecanoic acid and acetic acid and simultaneous adaptation studies indicated that this bacterium initiates degradation through a Calkyl–N cleavage. The cleavage of alkylamines to the respective alkanals in Pseudomonas strain BERT is mediated by a PMS-dependent alkylamine dehydrogenase. This alkylamine dehydrogenase produces stoichiometric amounts of ammonium from octylamine. The PMS-dependent alkylamine was found to oxidize a broad range of long-chain alkylamines. PMS-dependent long-chain aldehyde dehydrogenase activity was also detected in cell-free extract of Pseudomonas strain BERT grown on octylamine. The proposed pathway for the oxidation of alkylamine in strain BERT proceeds from alkylamine to alkanal, and then to the fatty acid

Testing the importance of a common ectomycorrhizal network for dipterocarp seedling growth and survival in tropical forests of Borneo

Background: Connections between mature trees and seedlings via ectomycorrhizal (EcM) hyphal networks existing in dipterocarp-dominated tropical rain forests of South-east Asia could have strong implications for seedling growth and survival and the maintenance of high diversity in such forests. Aim: To test whether EcM hyphal network connections are important for the growth and survival of dipterocarp seedlings. Methods: We conducted four independent experiments that prevented contact of experimental seedlings with an EcM network by using a series of fine meshes and/or plastic barriers. We measured the growth and survival (and foliar δ13C in one experiment) of seedlings of six dipterocarp species over intervals ranging from 11 to 29 months. Results: Seedling growth (diameter, height or leaf number) was unaffected by exclusion from the EcM network in three experiments and there were no differences in foliar δ13C values in the fourth. Seedling survival was reduced following exclusion from the EcM network in one experiment. Our results give little support to the hypothesis that dipterocarp seedlings growing in the shaded forest understorey benefit from being connected, through a common EcM network, to surrounding trees. Conclusions: We suggest that our negative results, in contrast to studies conducted in low diversity boreo-temperate or tropical forests, are due to these high diversity forests lacking host species-specific EcM fungi and therefore providing little opportunity for adaptive support of seedlings via hyphal networks

Rapid genotypic change and plasticity in arbuscular mycorrhizal fungi is caused by a host shift and enhanced by segregation.

Arbuscular mycorrhizal fungi (AMF) are among the most abundant symbionts of plants, improving plant productivity and diversity. They are thought to mostly grow vegetatively, a trait assumed to limit adaptability. However, AMF can also harbor genetically different nuclei (nucleotypes). It has been shown that one AMF can produce genotypically novel offspring with proportions of different nucleotypes. We hypothesized that (1) AMF respond rapidly to a change of environment (plant host) through changes in the frequency of nucleotypes; (2) genotypically novel offspring exhibit different genetic responses to environmental change than the parent; and (3) genotypically novel offspring exhibit a wide range of phenotypic plasticity to a change of environment. We subjected AMF parents and offspring to a host shift. We observed rapid and large genotypic changes in all AMF lines that were not random. Genotypic and phenotypic responses were different among offspring and their parents. Even though growing vegetatively, AMF offspring display a broad range of genotypic and phenotypic changes in response to host shift. We conclude that AMF have the ability to rapidly produce variable progeny, increasing their probability to produce offspring with different fitness than their parents and, consequently, their potential adaptability to new environmental conditions. Such genotypic and phenotypic flexibility could be a fast alternative to sexual reproduction and is likely to be a key to the ecological success of AMF