Parameterizing the microbial loop: an experiment in reducing model complexity

The structure of the plankton food web in the upper mixed layer has important implications for the export of biogenic material from the euphotic zone. While the action of the microbial loop causes material to be recycled near the surface, activity of the larger zooplankton leads to a significant downward flux of material. The balance between these pathways must be properly represented in climate models to predict carbon export. However, the number of biogeochemical compartments available to represent the food web is limited by the need to couple biogeochemical models with general circulation models. A structurally simple model is therefore sought, with a number of free parameters, which can be constrained by available observations to produce reliable estimates of export.A step towards addressing this aim is described: an attempt is made to emulate the behavior of an 11 compartment model with an explicit microbial loop, using a 4 compartment model. The latter, incorporating a basic microbial loop parameterization, is derived directly from the 'true' model. The results are compared with equivalent results for a 4 compartment model with no representation of the microbial loop. These non-identical twin experiments suggest that export estimates from 4 compartment models are prone to serious biases in regions where the action of the microbial loop is significant. The basic parameterization shows some promise in addressing the problem but a more sophisticated parameterization would be needed to produce reliable estimates. Some recommendations are made for future research

Milling characteristics and distribution of phytic acid and zind in long-, medium- and short-grain rice

Milling and polishing are important operations during the production of white rice. The degree of milling and polishing has a significant effect on the nutritional aspects of white rice, especially on minerals, due to a non-uniform distribution of nutrients in the kernel. Information on the distribution of nutrients in rice will greatly help in understanding the effect of milling and aid in designing procedures that improve technological and sensory properties of rice while retaining its essential nutrients as much as possible. In this study, three kernel shapes (short-, medium- and long-grain) of rice were selected for the study of milling characteristics and distribution of zinc (Zn) and phytic acid using abrasive milling and X-ray fluorescent microscope imaging approaches. Milling characteristics differed with kernel shapes and cultivars. Mass loss (y, %) correlated well with milling duration (x, s) and was fitted using a polynomial equation of y=ax2+bx+c (R2=0.99). Different kernel shapes of rice resulted in different patterns. Breakage in milling increased with longer duration of milling. The relation between breakage (y, %) and milling duration (x, s) fitted the exponential equation y=aebx. Levels of phytic acid, as well as Zn, decreased with prolonged milling. Phytic acid decreased at a higher rate than Zn. The analysis of different milling runs showed that the concentration of phytic acid decreased from the surface region inward, whereas X-ray fluorescent images indicated that the highest concentration of phosphorus was at the interface of the embryo and perisperm. Our results help in understanding the milling characteristics of different rice cultivars. Understanding these characteristics offers opportunities to optimize milling procedures for maximum phytate removal at minimum mineral losses and yield los

Soya bean tempe extracts show antibacterial activity against Bacillus cereus cells and spores

Aims: Tempe, a Rhizopus ssp.-fermented soya bean food product, was investigated for bacteriostatic and/or bactericidal effects against cells and spores of the food-borne pathogen Bacillus cereus. Methods and results: Tempe extract showed a high antibacterial activity against B. cereus ATCC 14579 based on optical density and viable count measurements. This growth inhibition was manifested by a 4 log CFU ml-1 reduction, within the first 15 min of exposure. Tempe extracts also rapidly inactivated B. cereus spores upon germination. Viability and membrane permeability assessments using fluorescence probes showed rapid inactivation and permeabilization of the cytoplasmic membrane confirming the bactericidal mode of action. Cooked beans and Rhizopus grown on different media did not show antibacterial activity, indicating the unique association of the antibacterial activity with tempe. Subsequent characterization of the antibacterial activity revealed that heat treatment and protease addition nullified the bactericidal effect, indicating the proteinaceous nature of the bioactive compound. Conclusions: During fermentation of soya beans with Rhizopus, compounds are released with extensive antibacterial activity against B. cereus cells and spores. Significance and Impact of Study: The results show the potential of producing natural antibacterial compounds that could be used as ingredients in food preservation and pathogen contro

A survey on composition and microbiota of fresh and fermented yak milk at different Tibetan altitudes

Yak milk is a type of milk that people are less familiar with due to its remote geographical location, the particular geographical environment and climatic conditions in Tibet, which may have significant effects on composition, microbiota and fermentation outcome. To investigate the chemical composition and microbiota of fresh and fermented yak milk, and to isolate and characterize the predominant microorganisms in the fermented milk, yak milk (24 fresh and 30 fermented milk samples) was collected from four areas of different altitudes in Tibet, and their microbiological profile and chemical composition were investigated. Yak milk had a higher fat, crude protein, lactose and dry matter content than cow milk. The fermented yak milk showed a great diversity in fat and dry matter levels due to the different ways of processing in different localities, and lower pH and higher lactic acid content compared with commercial cow milk yogurt. Fermented yak milk had a better sanitary quality than fresh yak milk. Three species of lactobacilli (Lactobacillus fermentum, Lactobacillus helveticus and Lactobacillus curvatus) and five species of yeast (Saccharomyces cerevisiae, Candida kefyr, Candida lambica, Candida famat and Candida holmii) were identified phenotypically and encountered as predominant fermentation microbiota. The predominant lactic species in fermented milk was L. fermentu