Twisting K3 x T^2 Orbifolds

We construct a class of geometric twists of Calabi-Yau manifolds of Voisin-Borcea type (K3 x T^2)/Z_2 and study the superpotential in a type IIA orientifold based on this geometry. The twists modify the direct product by fibering the K3 over T^2 while preserving the Z_2 involution. As an important application, the Voisin-Borcea class contains T^6/(Z_2 x Z_2), the usual setting for intersecting D6 brane model building. Past work in this context considered only those twists inherited from T^6, but our work extends these twists to a subset of the blow-up modes. Our work naturally generalizes to arbitrary K3 fibered Calabi-Yau manifolds and to nongeometric constructions.Comment: 57 pages, 4 figures; uses harvmac.tex, amssym.tex; v3: minor corrections, references adde

Phase-Sensitive Tetracrystal Pairing-Symmetry Measurements and Broken Time-Reversal Symmetry States of High Tc Superconductors

A detailed analysis of the symmetric tetracrystal geometry used in phase-sensitive pairing symmetry experiments on high Tc superconductors is carried out for both bulk and surface time-reversal symmetry-breaking states, such as the d+id' and d+is states. The results depend critically on the substrate geometry. In the general case, for the bulk d+id' (or d+is) state, the measured flux quantization should in general not be too different from that obtained in the pure d-wave case, provided |d'| << |d| (or |s| << |d|). However, in one particular high symmetry geometry, the d+id' state gives results that allow it to be distinguished from the pure d and the d + is states. Results are also given for the cases where surface d+is or d+id' states occur at a [110] surface of a bulk d-wave superconductor. Remarkably, in the highest symmetry geometry, a number of the broken time-reversal symmetry states discussed above give flux quantization conditions usually associated with states not having broken time- reversal symmetry.Comment: 6 page

A misplaced lncRNA causes brachydactyly in humans

Translocations are chromosomal rearrangements that are frequently associated with a variety of disease states and developmental disorders. We identified 2 families with brachydactyly type E (BDE) resulting from different translocations affecting chromosome 12p. Both translocations caused downregulation of the parathyroid hormone-like hormone (PTHLH) gene by disrupting the cis-regulatory landscape. Using chromosome conformation capturing, we identified a regulator on chromosome 12q that interacts in cis with PTHLH over a 24.4-megabase distance and in trans with the sex-determining region Y-box 9 (SOX9) gene on chromosome 17q. The element also harbored a long noncoding RNA (lncRNA). Silencing of the lncRNA, PTHLH, or SOX9 revealed a feedback mechanism involving an expression-dependent network in humans. In the BDE patients, the human lncRNA was upregulated by the disrupted chromosomal association. Moreover, the lncRNA occupancy at the PTHLH locus was reduced. Our results document what we believe to be a novel in cis- and in trans-acting DNA and lncRNA regulatory feedback element that is reciprocally regulated by coding genes. Furthermore, our findings provide a systematic and combinatorial view of how enhancers encoding lncRNAs may affect gene expression in normal development

Theory of band gap bowing of disordered substitutional II-VI and III-V semiconductor alloys

For a wide class of technologically relevant compound III-V and II-VI semiconductor materials AC and BC mixed crystals (alloys) of the type A(x)B(1-x)C can be realized. As the electronic properties like the bulk band gap vary continuously with x, any band gap in between that of the pure AC and BC systems can be obtained by choosing the appropriate concentration x, granted that the respective ratio is miscible and thermodynamically stable. In most cases the band gap does not vary linearly with x, but a pronounced bowing behavior as a function of the concentration is observed. In this paper we show that the electronic properties of such A(x)B(1-x)C semiconductors and, in particular, the band gap bowing can well be described and understood starting from empirical tight binding models for the pure AC and BC systems. The electronic properties of the A(x)B(1-x)C system can be described by choosing the tight-binding parameters of the AC or BC system with probabilities x and 1-x, respectively. We demonstrate this by exact diagonalization of finite but large supercells and by means of calculations within the established coherent potential approximation (CPA). We apply this treatment to the II-VI system Cd(x)Zn(1-x)Se, to the III-V system In(x)Ga(1-x)As and to the III-nitride system Ga(x)Al(1-x)N.Comment: 14 pages, 10 figure

Massive IIA flux compactifications and U-dualities

We attempt to find a rigorous formulation for the massive type IIA orientifold compactifications of string theory introduced in hep-th/0505160. An approximate double T-duality converts this background into IIA string theory on a twisted torus, but various arguments indicate that the back reaction of the orientifold on this geometry is large. In particular, an AdS calculation of the entropy suggests a scaling appropriate for N M2-branes, in a certain limit of the compactification, though not the one studied in hep-th/0505160. The M-theory lift of this specific regime is not 4 dimensional. We suggest that the generic limit of the background corresponds to a situation analogous to F-theory, where the string coupling is small in some regions of a compact geometry, and large in others, so that neither a long wavelength 11D SUGRA expansion, nor a world sheet expansion exists for these compactifications. We end with a speculation on the nature of the generic compactification.Comment: JHEP3 LaTeX - 34 pages - 3 figures; v2: Added references; v3: mistake in entropy scaling corrected, major changes in conclusions; v4: changed claims about original DeWolfe et al. setup, JHEP versio

Poly-instanton Inflation

We propose a new inflationary scenario in type IIB Calabi-Yau compactifications, where the inflaton is a K\"ahler modulus parameterising the volume of an internal four-cycle. The inflaton potential is generated via poly-instanton corrections to the superpotential which give rise to a naturally flat direction due to their double exponential suppression. Given that the volume mode is kept stable during inflation, all the inflaton-dependent higher dimensional operators are suppressed. Moreover, string loop effects can be shown to be negligible throughout all the inflationary dynamics for natural values of the underlying parameters. The model is characterised by a reheating temperature of the order $T_{\rm rh}\simeq 10^6$ GeV which requires $N_e \simeq 54$ e-foldings of inflation. All the inflationary observables are compatible with current observations since the spectral index is $n_s \simeq 0.96$, while the tensor-to-scalar ratio is $r\simeq 10^{-5}$. The volume of the Calabi-Yau is of order $10^3$ in string units, corresponding to an inflationary scale around $10^{15}$ GeVComment: 20 pages, 4 figure

Nongeometric Flux Compactifications

We investigate a simple class of type II string compactifications which incorporate nongeometric "fluxes" in addition to "geometric flux" and the usual H-field and R-R fluxes. These compactifications are nongeometric analogues of the twisted torus. We develop T-duality rules for NS-NS geometric and nongeometric fluxes, which we use to construct a superpotential for the dimensionally reduced four-dimensional theory. The resulting structure is invariant under T-duality, so that the distribution of vacua in the IIA and IIB theories is identical when nongeometric fluxes are included. This gives a concrete framework in which to investigate the possibility that generic string compactifications may be nongeometric in any duality frame. The framework developed in this paper also provides some concrete hints for how mirror symmetry can be generalized to compactifications with arbitrary H-flux, whose mirrors are generically nongeometric.Comment: 26 pages, JHEP3. v3: references, minor corrections, and clarifications added. v4: sign correcte

Non-Markovian entanglement dynamics in coupled superconducting qubit systems

We theoretically analyze the entanglement generation and dynamics by coupled Josephson junction qubits. Considering a current-biased Josephson junction (CBJJ), we generate maximally entangled states. In particular, the entanglement dynamics is considered as a function of the decoherence parameters, such as the temperature, the ratio $r\equiv\omega_c/\omega_0$ between the reservoir cutoff frequency $\omega_c$ and the system oscillator frequency $\omega_0$, % between $\omega_0$ the characteristic frequency of the %quantum system of interest, and $\omega_c$ the cut-off frequency of %Ohmic reservoir and the energy levels split of the superconducting circuits in the non-Markovian master equation. We analyzed the entanglement sudden death (ESD) and entanglement sudden birth (ESB) by the non-Markovian master equation. Furthermore, we find that the larger the ratio $r$ and the thermal energy $k_BT$, the shorter the decoherence. In this superconducting qubit system we find that the entanglement can be controlled and the ESD time can be prolonged by adjusting the temperature and the superconducting phases $\Phi_k$ which split the energy levels.Comment: 13 pages, 3 figure

Type IIA Moduli Stabilization

We demonstrate that flux compactifications of type IIA string theory can classically stabilize all geometric moduli. For a particular orientifold background, we explicitly construct an infinite family of supersymmetric vacua with all moduli stabilized at arbitrarily large volume, weak coupling, and small negative cosmological constant. We obtain these solutions from both ten-dimensional and four-dimensional perspectives. For more general backgrounds, we study the equations for supersymmetric vacua coming from the effective superpotential and show that all geometric moduli can be stabilized by fluxes. We comment on the resulting picture of statistics on the landscape of vacua.Comment: 48 pages, 2 figures, LaTeX. v2: references added. v3: minor comments & references adde