Structure of a rare non-standard sequence k-turn bound by L7Ae protein

Kt-23 from Thelohania solenopsae is a rare RNA kink turn (k-turn) where an adenine replaces the normal guanine at the 2n position. L7Ae is a member of a strongly conserved family of proteins that bind a range of k-turn structures in the ribosome, box C/D and H/ACA small nucleolar RNAs and U4 small nuclear RNA. We have solved the crystal structure of T. solenopsae Kt-23 RNA bound to Archeoglobus fulgidus L7Ae protein at a resolution of 2.95 Å. The protein binds in the major groove displayed on the outer face of the k-turn, in a manner similar to complexes with standard k-turn structures. The k-turn adopts a standard N3 class conformation, with a single hydrogen bond from A2b N6 to A2n N3. This contrasts with the structure of the same sequence located in the SAM-I riboswitch, where it adopts an N1 structure, showing the inherent plasticity of k-turn structure. This potentially can affect any tertiary interactions in which the RNA participates

Observation of strong electron dephasing in disordered Cu93_{93}Ge4_4Au3_3 thin films

We report the observation of strong electron dephasing in a series of disordered Cu$_{93}$Ge$_4$Au$_3$ thin films. A very short electron dephasing time possessing very weak temperature dependence around 6 K, followed by an upturn with further decrease in temperature below 4 K, is found. The upturn is progressively more pronounced in more disordered samples. Moreover, a ln$T$ dependent, but high-magnetic-field-insensitive, resistance rise persisting from above 10 K down to 30 mK is observed in the films. These results suggest a nonmagnetic dephasing process which is stronger than any known mechanism and may originate from the coupling of conduction electrons to dynamic defects.Comment: to appear in Phys. Rev. Let

Octet Baryon Charge Radii, Chiral Symmetry and Decuplet Intermediate States

We compute the octet baryon charge radii to O(1/Heavy^3) in heavy baryon chiral perturbation theory. We examine the effect of including the decuplet of spin-3/2 baryons explicitly. We find that it does no t improve the level of agreement between the HBchiPT and experimental values for the Sigma^- charge radius.Comment: 9 pages, 2 figures. Uses axodraw.sty, include

Direct Numerical Simulation of a separated channel flow with a smooth profile

A direct numerical simulation (DNS) of a channel flow with one curved surface was performed at moderate Reynolds number (Re_tau = 395 at the inlet). The adverse pressure gradient was obtained by a wall curvature through a mathematical mapping from physical coordinates to Cartesian ones. The code, using spectral spanwise and normal discretization, combines the advantage of a good accuracy with a fast integration procedure compared to standard numerical procedures for complex geometries. The turbulent flow slightly separates on the profile at the lower curved wall and is at the onset of separation at the opposite flat wall. The thin separation bubble is characterized with a reversal flow fraction. Intense vortices are generated near the separation line on the lower wall but also at the upper wall. Turbulent normal stresses and kinetic energy budget are investigated along the channel.Comment: 23 pages, submitted to Journal of Turbulenc

Tunneling and delocalization in hydrogen bonded systems: a study in position and momentum space

Novel experimental and computational studies have uncovered the proton momentum distribution in hydrogen bonded systems. In this work, we utilize recently developed open path integral Car-Parrinello molecular dynamics methodology in order to study the momentum distribution in phases of high pressure ice. Some of these phases exhibit symmetric hydrogen bonds and quantum tunneling. We find that the symmetric hydrogen bonded phase possesses a narrowed momentum distribution as compared with a covalently bonded phase, in agreement with recent experimental findings. The signatures of tunneling that we observe are a narrowed distribution in the low-to-intermediate momentum region, with a tail that extends to match the result of the covalently bonded state. The transition to tunneling behavior shows similarity to features observed in recent experiments performed on confined water. We corroborate our ice simulations with a study of a particle in a model one-dimensional double well potential that mimics some of the effects observed in bulk simulations. The temperature dependence of the momentum distribution in the one-dimensional model allows for the differentiation between ground state and mixed state tunneling effects.Comment: 14 pages, 13 figure

Lifshitz Transition in Underdoped Cuprates

Recent studies show that quantum oscillations thought to be associated with a density wave reconstructed Fermi surface disappear at a critical value of the doping for YBa2Cu3O6+y, and the cyclotron mass diverges as the critical value is approached from the high doping side. We argue that the phenomenon is due to a Lifshitz transition where the pockets giving rise to the quantum oscillations connect to form an open (quasi-1d) Fermi surface. The estimated critical doping is close to that found by experiment, and the theory predicts a logarithmic divergence of the cyclotron mass with a coefficient comparable to that observed in experiment.Comment: 4 pages, 4 figure

A note on the power divergence in lattice calculations of ΔI=1/2\Delta I = 1/2 K→ππK\to\pi\pi amplitudes at MK=MπM_{K}=M_{\pi}

In this note, we clarify a point concerning the power divergence in lattice calculations of $\Delta I = 1/2$ $K\to\pi\pi$ decay amplitudes. There have been worries that this divergence might show up in the Minkowski amplitudes at $M_{K}=M_{\pi}$ with all the mesons at rest. Here we demonstrate, via an explicit calculation in leading-order Chiral Perturbation Theory, that the power divergence is absent at the above kinematic point, as predicted by CPS symmetry.Comment: 5 pages, 2 figure

Drag of two-dimensional small-amplitude symmetric and asymmetric wavy walls in turbulent boundary layers

Included are results of an experimental investigation of low-speed turbulent flow over multiple two-dimensional transverse rigid wavy surfaces having a wavelength on the order of the boundary-layer thickness. Data include surface pressure and total drag measurements on symmetric and asymmetric wall waves under a low-speed turbulent boundary-layer flow. Several asymmetric wave configurations exhibited drag levels below the equivalent symmetric (sine) wave. The experimental results compare favorably with numerical predictions from a Reynolds-averaged Navier-Stokes spectral code. The reported results are of particular interest for the estimation of drag, the minimization of fabrication waviness effects, and the study of wind-wave interactions