1,185 research outputs found

    Особенности личности и межличностных отношений супругов при социогенной и психогенной эректильной дисфункции у мужа

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    Методами психодиагностического обследования выявлены личностные особенности, играющие роль в нарушении общей и сексуальной коммуникации супругов при эректильной дисфункции у мужа. Показаны закономерности формирования супружеской дезадаптации при данной патологии у мужчин.Methods of psychodiagnostic examination were used to reveal the personality peculiarities, which play a role in the disorders of general and sexual communication of the spouses at erectile dysfunction in the husband. The regularities of forming spouse deadaptation with the pathology in men are shown

    Statistical Mechanics of Torque Induced Denaturation of DNA

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    A unifying theory of the denaturation transition of DNA, driven by temperature T or induced by an external mechanical torque Gamma is presented. Our model couples the hydrogen-bond opening and the untwisting of the helicoidal molecular structure. We show that denaturation corresponds to a first-order phase transition from B-DNA to d-DNA phases and that the coexistence region is naturally parametrized by the degree of supercoiling sigma. The denaturation free energy, the temperature dependence of the twist angle, the phase diagram in the T,Gamma plane and isotherms in the sigma, Gamma plane are calculated and show a good agreement with experimental data.Comment: 5 pages, 3 figures, model improve

    DNA unzipped under a constant force exhibits multiple metastable intermediates

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    Single molecule studies, at constant force, of the separation of double-stranded DNA into two separated single strands may provide information relevant to the dynamics of DNA replication. At constant applied force, theory predicts that the unzipped length as a function of time is characterized by jumps during which the strands separate rapidly, followed by long pauses where the number of separated base pairs remains constant. Here, we report previously uncharacterized observations of this striking behavior carried out on a number of identical single molecules simultaneously. When several single lphage molecules are subject to the same applied force, the pause positions are reproducible in each. This reproducibility shows that the positions and durations of the pauses in unzipping provide a sequence-dependent molecular fingerprint. For small forces, the DNA remains in a partially unzipped state for at least several hours. For larger forces, the separation is still characterized by jumps and pauses, but the double-stranded DNA will completely unzip in less than 30 min

    Periodically driven stochastic un- and refolding transitions of biopolymers

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    Mechanical single molecule experiments probe the energy profile of biomolecules. We show that in the case of a profile with two minima (like folded/unfolded) periodic driving leads to a stochastic resonance-like phenomenon. We demonstrate that the analysis of such data can be used to extract four basic parameters of such a transition and discuss the statistical requirements of the data acquisition. As advantages of the proposed scheme, a polymeric linker is explicitly included and thermal fluctuations within each well need not to be resolved.Comment: 7 pages, 5 figures, submitted to EP

    Getting DNA twist rigidity from single molecule experiments

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    We use an elastic rod model with contact to study the extension versus rotation diagrams of single supercoiled DNA molecules. We reproduce quantitatively the supercoiling response of overtwisted DNA and, using experimental data, we get an estimation of the effective supercoiling radius and of the twist rigidity of B-DNA. We find that unlike the bending rigidity, the twist rigidity of DNA seems to vary widely with the nature and concentration of the salt buffer in which it is immerged

    Point force manipulation and activated dynamics of polymers adsorbed on structured substrates

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    We study the activated motion of adsorbed polymers which are driven over a structured substrate by a localized point force.Our theory applies to experiments with single polymers using, for example, tips of scanning force microscopes to drag the polymer.We consider both flexible and semiflexible polymers,and the lateral surface structure is represented by double-well or periodic potentials. The dynamics is governed by kink-like excitations for which we calculate shapes, energies, and critical point forces. Thermally activated motion proceeds by the nucleation of a kink-antikink pair at the point where the force is applied and subsequent diffusive separation of kink and antikink. In the stationary state of the driven polymer, the collective kink dynamics can be described by an one-dimensional symmetric simple exclusion process.Comment: 7 pages, 2 Figure

    Pulling a polymer out of a potential well and the mechanical unzipping of DNA

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    Motivated by the experiments on DNA under torsion, we consider the problem of pulling a polymer out of a potential well by a force applied to one of its ends. If the force is less than a critical value, then the process is activated and has an activation energy proportinal to the length of the chain. Above this critical value, the process is barrierless and will occur spontaneously. We use the Rouse model for the description of the dynamics of the peeling out and study the average behaviour of the chain, by replacing the random noise by its mean. The resultant mean-field equation is a nonlinear diffusion equation and hence rather difficult to analyze. We use physical arguments to convert this in to a moving boundary value problem, which can then be solved exactly. The result is that the time tpot_{po} required to pull out a polymer of NN segments scales like N2N^2. For models other than the Rouse, we argue that tpoN1+νt_{po}\sim N^{1+\nu}Comment: 11 pages, 6 figures. To appear in PhysicalReview

    Modeling Bacterial DNA: Simulation of Self-avoiding Supercoiled Worm-Like Chains Including Structural Transitions of the Helix

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    Under supercoiling constraints, naked DNA, such as a large part of bacterial DNA, folds into braided structures called plectonemes. The double-helix can also undergo local structural transitions, leading to the formation of denaturation bubbles and other alternative structures. Various polymer models have been developed to capture these properties, with Monte-Carlo (MC) approaches dedicated to the inference of thermodynamic properties. In this chapter, we explain how to perform such Monte-Carlo simulations, following two objectives. On one hand, we present the self-avoiding supercoiled Worm-Like Chain (ssWLC) model, which is known to capture the folding properties of supercoiled DNA, and provide a detailed explanation of a standard MC simulation method. On the other hand, we explain how to extend this ssWLC model to include structural transitions of the helix.Comment: Book chapter to appear in The Bacterial Nucleoid, Methods and Protocols, Springer serie
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