Nonlinear microrheology with time-dependent forces -- Application to recoils in viscoelastic fluids

This work presents a theoretical analysis of the motion of a tracer colloid driven by a time-dependent force through a viscoelastic fluid. The recoil of the colloid after application of a strong force is determined. It provides insights into the elastic forces stored locally in the fluid and their weakening by plastic processes. We generalize the mode coupling theory of microrheology to include time-dependent forces. After deriving the equations of motion for the tracer correlator and simplifying to a schematic model we apply the theory to a switch-off force protocol that features the recoiling of the tracer after cessation of the driving. We also include Langevin dynamics simulations to compare to the results of the theory. A non-monotonic trend of the recoil amplitude is found in the theory and confirmed in the simulations. The linear-response approximation is also verified in the small-force regime. While the overall agreement between simulation and theory is good, simulation shows that the theory predicts a too strong non-monotonous dependence of the recoil distance on the applied force.Comment: 17 pages, 12 figure

A Journey into Relief Printing (Summer 2025)

Caelyn M. Ditz, Embedded Counselor in the Counseling Center, worked in exploratory block and screen printing on paper and fabric.https://egrove.olemiss.edu/staff_res/1046/thumbnail.jp

Responsivity and Reproducibility of Sputum Inflammatory Biomarkers During COPD Exacerbation and Stable Phases - A Pilot Study

Introduction: There is a great interest to identify airway biomarkers to evaluate the potential and efficacy of anti-inflammatory therapeutic interventions. In this pilot study, we compared cytokine mRNA and protein levels of IL-6, IL-8, CCL2, CCL4, and TNF-α, as well as LTB-4 expression regarding their reproducibility and responsivity in induced sputum in COPD patients. Methods: We recruited a cohort of 17 patients with a moderate COPD exacerbation, necessitating antibiotics and/or oral corticosteroids. Patients were followed for two consecutive stable phase visits. Cytokine mRNA and protein levels were measured in induced sputum samples. Results: IL-6 and CCL4 protein levels decreased from exacerbation to stable phase, whereas their mRNA expression showed the same trend (not statistically significant). Coefficients of variation were overall lower (ie, more favorable for responsiveness) at protein levels compared to mRNA levels. No significant differences were observed in the reproducibility between cytokine mRNA expression and protein measurements. IL-6, IL-8, CCL2, and TNF-α gene expression levels yielded moderate to high intraclass correlation coefficients and/or Spearman correlation coefficients between both stable phase samples in contrast to their protein levels. Conclusion: Our findings suggest that several protein levels yield better responsivity with lower noise-to-signal ratios compared to their respective mRNA levels. In contrast, cytokine mRNA expression was more reproducible as it varied less in a stable state than proteins. Future studies are needed with a larger sample size to further evaluate the differences of responsivity and reproducibility between cytokine mRNA and protein measurements, not only during exacerbations

Comportamento De Almofadas De Argamassa Modificada Na Transferência De Tensões De Compressão

This research aims to analyze the compressive stress transfer between precast concrete elements using cement mortar pads modified with polypropylene fibers, styrene-butadiene latex and heat-expanded vermiculite. The stress transfer analyses are performed interleaving a cementbearing pad between two concrete blocks, subjecting the entire specimen to different compressive load tests. The parameters analyzed in the tests are: surface roughness (using bosses on the bonded phase of different thicknesses), compressive strength with monotonic and cyclic loadings. The main results obtained in this study are: a) the presence of pad increased the strength in 24% for thicknesses of imperfections of 0.5 mm and approximately 12% for smooth faces blocks; b) gain of effectiveness of the bearing pad when the concrete strength was reduced; c) for cyclic loading, the bearing pad increased in 48% the connections strength.9341443

Sputum microbiome profiling in COPD: beyond singular pathogen detection.

Culture-independent microbial sequencing techniques have revealed that the respiratory tract harbours a complex microbiome not detectable by conventional culturing methods. The contribution of the microbiome to chronic obstructive pulmonary disease (COPD) pathobiology and the potential for microbiome-based clinical biomarkers in COPD are still in the early phases of investigation. Sputum is an easily obtainable sample and has provided a wealth of information on COPD pathobiology, and thus has been a preferred sample type for microbiome studies. Although the sputum microbiome likely reflects the respiratory microbiome only in part, there is increasing evidence that microbial community structure and diversity are associated with disease severity and clinical outcomes, both in stable COPD and during the exacerbations. Current evidence has been limited to mainly cross-sectional studies using 16S rRNA gene sequencing, attempting to answer the question 'who is there?' Longitudinal studies using standardised protocols are needed to answer outstanding questions including differences between sputum sampling techniques. Further, with advancing technologies, microbiome studies are shifting beyond the examination of the 16S rRNA gene, to include whole metagenome and metatranscriptome sequencing, as well as metabolome characterisation. Despite being technically more challenging, whole-genome profiling and metabolomics can address the questions 'what can they do?' and 'what are they doing?' This review provides an overview of the basic principles of high-throughput microbiome sequencing techniques, current literature on sputum microbiome profiling in COPD, and a discussion of the associated limitations and future perspectives

Neurons in the Hippocampus of Crows Lack Responses to Non-spatial Abstract Categories

Lesion studies suggest a role of the avian hippocampus in spatial and episodic memory. However, whether the avian hippocampus is also involved in processing categorical information and non-spatial working memory contents remains unknown. To address this question, we trained two crows in a delayed-match-to-sample test to assess and briefly memorize the number of items in dot displays, i.e., their numerosity. We recorded neuronal activity in hippocampus while crows solved this task. Hardly any hippocampal neurons responded to the category ‘numerosity,’ during neither sample presentation, nor during the memory delay. This was in striking contrast to previous recordings in the telencephalic association area ‘nidopallium caudolaterale’ (NCL) of the same crows, in which we previously reported an abundance of numerosity-selective and working memory-selective neurons. Our data suggest that categorical information is not processed in the avian hippocampus

Comportamento de almofadas de argamassa modificada na transferência de tensões de compressão

This research aims to analyze the compressive stress transfer between precast concrete elements using cement mortar pads modified with polypropylene fibers, styrene-butadiene latex and heat-expanded vermiculite. The stress transfer analyses are performed interleaving a cementbearing pad between two concrete blocks, subjecting the entire specimen to different compressive load tests. The parameters analyzed in the tests are: surface roughness (using bosses on the bonded phase of different thicknesses), compressive strength with monotonic and cyclic loadings. The main results obtained in this study are: a) the presence of pad increased the strength in 24% for thicknesses of imperfections of 0.5 mm and approximately 12% for smooth faces blocks; b) gain of effectiveness of the bearing pad when the concrete strength was reduced; c) for cyclic loading, the bearing pad increased in 48% the connections strength.O objetivo deste trabalho é analisar a transferência de tensões de compressão entre elementos de concreto pré-moldado através de almofadas de argamassa modificadas com fibras de polipropileno, látex estireno-butadieno e vermiculita termo-expandida. As análises de transferência de tensões foram realizadas intercalando uma almofada entre dois blocos de concreto e submetendo o corpo de prova a ensaios de compressão. Os parâmetros variados foram: rugosidade superficial (saliências na face ligada de diferentes espessuras), resistência à compressão do concreto dos blocos e carregamento monotônico e cíclico. Os principais resultados dos ensaios de ligação foram: a) a presença da almofada aumentou a resistência em 24% para espessuras de saliências de 0,5 mm e cerca de 12% para blocos com faces ligadas lisas; b) a efetividade da almofada aumentou à medida que se reduziu a resistência à compressão do concreto; c) para carregamento cíclico, a almofada de apoio aumentou em 48% a resistência da ligação.9341443

Sputum microbiome profiling in COPD:beyond singular pathogen detection

Culture-independent microbial sequencing techniques have revealed that the respiratory tract harbours a complex microbiome not detectable by conventional culturing methods. The contribution of the microbiome to chronic obstructive pulmonary disease (COPD) pathobiology and the potential for microbiome-based clinical biomarkers in COPD are still in the early phases of investigation. Sputum is an easily obtainable sample and has provided a wealth of information on COPD pathobiology, and thus has been a preferred sample type for microbiome studies. Although the sputum microbiome likely reflects the respiratory microbiome only in part, there is increasing evidence that microbial community structure and diversity are associated with disease severity and clinical outcomes, both in stable COPD and during the exacerbations. Current evidence has been limited to mainly cross-sectional studies using 16S rRNA gene sequencing, attempting to answer the question 'who is there?' Longitudinal studies using standardised protocols are needed to answer outstanding questions including differences between sputum sampling techniques. Further, with advancing technologies, microbiome studies are shifting beyond the examination of the 16S rRNA gene, to include whole metagenome and metatranscriptome sequencing, as well as metabolome characterisation. Despite being technically more challenging, whole-genome profiling and metabolomics can address the questions 'what can they do?' and 'what are they doing?' This review provides an overview of the basic principles of high-throughput microbiome sequencing techniques, current literature on sputum microbiome profiling in COPD, and a discussion of the associated limitations and future perspectives

Structure of the multi-subunit chloroplast RNA polymerase

Chloroplasts contain a dedicated genome that encodes subunits of the photosynthesis machinery. Transcription of photosynthesis genes is predominantly carried out by a plastid-encoded RNA polymerase (PEP), a nearly 1 MDa complex composed of core subunits with homology to eubacterial RNA polymerases (RNAPs) and at least 12 additional chloroplast-specific PEP-associated proteins (PAPs). However, the architecture of this complex and the functions of the PAPs remain unknown. Here, we report the cryo-EM structure of a 19-subunit PEP complex from Sinapis alba (white mustard). The structure reveals that the PEP core resembles prokaryotic and nuclear RNAPs but contains chloroplast-specific features that mediate interactions with the PAPs. The PAPs are unrelated to known transcription factors and arrange around the core in a unique fashion. Their structures suggest potential functions during transcription in the chemical environment of chloroplasts. These results reveal structural insights into chloroplast transcription and provide a framework for understanding photosynthesis gene expression