Automated Classification of Airborne Laser Scanning Point Clouds

Making sense of the physical world has always been at the core of mapping. Up until recently, this has always dependent on using the human eye. Using airborne lasers, it has become possible to quickly "see" more of the world in many more dimensions. The resulting enormous point clouds serve as data sources for applications far beyond the original mapping purposes ranging from flooding protection and forestry to threat mitigation. In order to process these large quantities of data, novel methods are required. In this contribution, we develop models to automatically classify ground cover and soil types. Using the logic of machine learning, we critically review the advantages of supervised and unsupervised methods. Focusing on decision trees, we improve accuracy by including beam vector components and using a genetic algorithm. We find that our approach delivers consistently high quality classifications, surpassing classical methods

Describing an online co-development process of VAWG prevention intervention activities with young high school learners, in Eastern Cape Province, South Africa

This is the author accepted manuscript. The final version is available from SAGE Publications via the DOI in this record. Evidence suggests that co-developed participatory interventions to prevent violence against women and girls (VAWG) may support behavior change. Yet, adolescents are often excluded from intervention development. Moreover, there remains a gap in understanding if intervention co-development can occur online. Our study explored the feasibility of undertaking an online co-development process for a participatory VAWG prevention intervention. We worked with a small group of high school learners (18–19 years), from the Eastern Cape Province, South Africa. We collected session notes and audio recorded sessions. Adolescents enjoyed the level of autonomy and their depth of involvement in the process. They were eager to be involved, and they appreciated being “heard.” Adolescents found it easy to build rapport online amongst each other, and with the facilitator. There were also challenges, the main one being young people’s, and facilitator’s, histories of didactic communication. Understanding the strengths and limitations of online co-development processes is crucial, to strengthen them.Nelson Mandela UniversitySouth African National Research FoundationSouth African Medical Research CouncilUniversity of Exete

Low- And medium-spin negative-parity bands in the Os 187 nucleus

Low- and medium-spin negative-parity bands of Os187 have been studied using the AFRican Omnipurpose Detector for Innovative Techniques and Experiments (AFRODITE) array, following the W186(He4,3n)Os187 reaction at a beam energy of 37 MeV. In the current work, all the previously known bands have been significantly extended and three new bands have been added to the level scheme. The angular distribution ratio (RAD) and polarization measurements have been used to assign spin and parity to the observed new levels. The configurations of some of the bands have been modified. The observed bands are interpreted within the cranked shell model (CSM) and cranked Nilsson-Strutinsky-Bogoliubov (CNSB) formalism. Comparison with experimental data shows good agreements. Systematic comparison with the neighboring Os185 isotope is also discussed

Practices in scholarly publishing : making sense of rejection

Abstract: In South Africa, criticisms of peer review often hinge on allegations of racism, anti-African attitudes, and viewpoint discrimination. This article discusses the issue of peer-review, and examines these allegations in terms of claims of Western conceptual gatekeeping. Cautions are offered on allegations of exceptionalism, as are some strategies on dealing with the process of peer review

Eye protection practices and symptoms among welders in the Limpopo Province of South Africa+

Welding is associated with several ocular and systemic hazards especially where adequate protective measures are not taken.  The purpose of this project was to study the eye protection practices and symptoms among welders in the Capricorn District of Limpopo Province, South Africa. Questionnaires designed to investigate eye protection practices and symptoms experienced were completed byone hundred and fifty (150) welders. The types of welding done were shielded metal arc (84%), oxyacetylene gas (4%) and silver brazing (12%). The number of years spent in the welding industry ranged from one to 10 years with a mean of 5 ± 3.1 years and the number of hours of welding per day ranged from one to 10 hours with a mean of 6 ± 2.1 hours. A large percentage of the welders (89%) reported wearing protective devices when welding and the most common protective devices used by the welders were: helmets (57%), goggles(22%), and face shields (15%). Six percent used inefficient protective devices such as sunglasses.   Sixty one percent reported occasional exposure to welding flashes when not wearing any eye protection. Welding-related eye symptoms reported included foreign body sensation (18%), persistent after-images (31%), and watery eyes (50%).  Al- though the majority of the welders wore protective devices while welding, a few did not always use such devices while others used sunglasses for protection.  Moreover, many of the welders were occasionally, and only a few were always, exposed to welding flashes when protective devices were not used. Therefore, we concluded that eye protectionpractices amongst the welders appeared to be inadequate to avoid hazards associated with welding.  It is recommended that an eye protection educational campaign for welders should form part of the SouthAfrican Government’s workplace safety program

DDX5 potentiates HIV-1 transcription as a co-factor of Tat

Funder: Cambridge Biomedical Research Centre (GB)Funder: Clinical Academic ReserveAbstract: Background: HIV-1 does not encode a helicase and hijacks those of the cell for efficient replication. We and others previously showed that the DEAD box helicase, DDX5, is an essential HIV dependency factor. DDX5 was recently shown to be associated with the 7SK snRNP. Cellular positive transcription elongation factor b (P-TEFb) is bound in an inactive form with HEXIM1/2 on 7SK snRNP. The Tat/P-TEFb complex is essential for efficient processivity of Pol II in HIV-1 transcription elongation and Tat competes with HEXIM1/2 for P-TEFb. We investigated the precise role of DDX5 in HIV replication using siRNA mediated knockdown and rescue with DDX5 mutants which prevent protein–protein interactions and RNA and ATP binding. Results: We demonstrate a critical role for DDX5 in the Tat/HEXIM1 interaction. DDX5 acts to potentiate Tat activity and can bind both Tat and HEXIM1 suggesting it may facilitate the dissociation of HEXIM1/2 from the 7SK-snRNP complex, enhancing Tat/P-TEFb availability. We show knockdown of DDX5 in a T cell line significantly reduces HIV-1 infectivity and viral protein production. This activity is unique to DDX5 and cannot be substituted by its close paralog DDX17. Overexpression of DDX5 stimulates the Tat/LTR promoter but suppresses other cellular and viral promoters. Individual mutations of conserved ATP binding, RNA binding, helicase related or protein binding motifs within DDX5 show that the N terminal RNA binding motifs, the Walker B and the glycine doublet motifs are essential for this function. The Walker A and RNA binding motifs situated on the transactivation domain are however dispensable. Conclusion: DDX5 is an essential cellular factor for efficient HIV transcription elongation. It interacts with Tat and may potentiate the availability of P-TEFb through sequestering HEXIM1

DDX5 potentiates HIV-1 transcription as a co-factor of Tat

Funder: Cambridge Biomedical Research Centre (GB)Funder: Clinical Academic ReserveAbstract: Background: HIV-1 does not encode a helicase and hijacks those of the cell for efficient replication. We and others previously showed that the DEAD box helicase, DDX5, is an essential HIV dependency factor. DDX5 was recently shown to be associated with the 7SK snRNP. Cellular positive transcription elongation factor b (P-TEFb) is bound in an inactive form with HEXIM1/2 on 7SK snRNP. The Tat/P-TEFb complex is essential for efficient processivity of Pol II in HIV-1 transcription elongation and Tat competes with HEXIM1/2 for P-TEFb. We investigated the precise role of DDX5 in HIV replication using siRNA mediated knockdown and rescue with DDX5 mutants which prevent protein–protein interactions and RNA and ATP binding. Results: We demonstrate a critical role for DDX5 in the Tat/HEXIM1 interaction. DDX5 acts to potentiate Tat activity and can bind both Tat and HEXIM1 suggesting it may facilitate the dissociation of HEXIM1/2 from the 7SK-snRNP complex, enhancing Tat/P-TEFb availability. We show knockdown of DDX5 in a T cell line significantly reduces HIV-1 infectivity and viral protein production. This activity is unique to DDX5 and cannot be substituted by its close paralog DDX17. Overexpression of DDX5 stimulates the Tat/LTR promoter but suppresses other cellular and viral promoters. Individual mutations of conserved ATP binding, RNA binding, helicase related or protein binding motifs within DDX5 show that the N terminal RNA binding motifs, the Walker B and the glycine doublet motifs are essential for this function. The Walker A and RNA binding motifs situated on the transactivation domain are however dispensable. Conclusion: DDX5 is an essential cellular factor for efficient HIV transcription elongation. It interacts with Tat and may potentiate the availability of P-TEFb through sequestering HEXIM1

Including Women? (Dis)junctures Between Voice,

Abstract Integrated development plans (IDPs) are municipal strategic plans designed to bring about developmental local government. They have been criticised for providing insufficient space for democratic participation. This paper explores the extent to which a marginalised group—women—has been incorporated into the IDP process, in response to three questions. First, how have IDP participatory processes incorporated women’s voice, and are the new participatory spaces realising their transformative potential? Secondly, how have women’s interests and a gender perspective been mainstreamed in the IDP, and has it promoted transformation? And finally, at the interface between officials and women themselves, how are IDP projects implemented and does agency promote or impede the goals of gender equality? A study of three KwaZulu-Natal municipalities reveals some achievements, but unequal gender relations have not been transformed. These case studies demonstrate some of the complexities and difficulties in the practice of democratic governance

Community-based antiretroviral therapy versus standard clinic-based services for HIV in South Africa and Uganda (DO ART): a randomised trial

Background: Community-based delivery of antiretroviral therapy (ART) for HIV, including ART initiation, clinical and laboratory monitoring, and refills, could reduce barriers to treatment and improve viral suppression, reducing the gap in access to care for individuals who have detectable HIV viral load, including men who are less likely than women to be virally suppressed. We aimed to test the effect of community-based ART delivery on viral suppression among people living with HIV not on ART. / Methods: We did a household-randomised, unblinded trial (DO ART) of delivery of ART in the community compared with the clinic in rural and peri-urban settings in KwaZulu-Natal, South Africa and the Sheema District, Uganda. After community-based HIV testing, people living with HIV were randomly assigned (1:1:1) with mobile phone software to community-based ART initiation with quarterly monitoring and ART refills through mobile vans; ART initiation at the clinic followed by mobile van monitoring and refills (hybrid approach); or standard clinic ART initiation and refills. The primary outcome was HIV viral suppression at 12 months. If the difference in viral suppression was not superior between study groups, an a-priori test for non-inferiority was done to test for a relative risk (RR) of more than 0·95. The cost per person virally suppressed was a co-primary outcome of the study. This study is registered with ClinicalTrials.gov, NCT02929992. / Findings: Between May 26, 2016, and March 28, 2019, of 2479 assessed for eligibility, 1315 people living with HIV and not on ART with detectable viral load at baseline were randomly assigned; 666 (51%) were men. Retention at the month 12 visit was 95% (n=1253). At 12 months, community-based ART increased viral suppression compared with the clinic group (306 [74%] vs 269 [63%], RR 1·18, 95% CI 1·07–1·29; psuperiority=0·0005) and the hybrid approach was non-inferior (282 [68%] vs 269 [63%], RR 1·08, 0·98–1·19; pnon-inferiority=0·0049). Community-based ART increased viral suppression among men (73%, RR 1·34, 95% CI 1·16–1·55; psuperiority<0·0001) as did the hybrid approach (66%, RR 1·19, 1·02–1·40; psuperiority=0·026), compared with clinic-based ART (54%). Viral suppression was similar for men (n=156 [73%]) and women (n=150 [75%]) in the community-based ART group. With efficient scale-up, community-based ART could cost US$275–452 per person reaching viral suppression. Community-based ART was considered safe, with few adverse events. / Interpretation: In high and medium HIV prevalence settings in South Africa and Uganda, community-based delivery of ART significantly increased viral suppression compared with clinic-based ART, particularly among men, eliminating disparities in viral suppression by gender. Community-based ART should be implemented and evaluated in different contexts for people with detectable viral load. / Funding: The Bill & Melinda Gates Foundation; the University of Washington and Fred Hutch Center for AIDS Research; the Wellcome Trust; the University of Washington Royalty Research Fund; and the University of Washington King K Holmes Endowed Professorship in STDs and AIDS