Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site

Restoration of polluted sites via in situ bioremediation relies heavily on the indigenous microbes and their activities. Spatial heterogeneity of microbial populations, contaminants and soil chemical parameters on such sites is a major hurdle in optimizing and implementing an appropriate bioremediation regime. We performed a grid-based sampling of an aged creosote-contaminated site followed by geostatistical modelling to illustrate the spatial patterns of microbial diversity and activity and to relate these patterns to the distribution of pollutants. Spatial distribution of bacterial groups unveiled patterns of niche differentiation regulated by patchy distribution of pollutants and an east-to-west pH gradient at the studied site. Proteobacteria clearly dominated in the hot spots of creosote pollution, whereas the abundance of Actinobacteria, TM7 and Planctomycetes was considerably reduced from the hot spots. The pH preferences of proteobacterial groups dominating in pollution could be recognized by examining the order and family-level responses. Acidobacterial classes came across as generalists in hydrocarbon pollution whose spatial distribution seemed to be regulated solely by the pH gradient. Although the community evenness decreased in the heavily polluted zones, basal respiration and fluorescein diacetate hydrolysis rates were higher, indicating the adaptation of specific indigenous microbial populations to hydrocarbon pollution. Combining the information from the kriged maps of microbial and soil chemistry data provided a comprehensive understanding of the long-term impacts of creosote pollution on the subsurface microbial communities. This study also highlighted the prospect of interpreting taxa-specific spatial patterns and applying them as indicators or proxies for monitoring polluted sites

Effects of Tillage and Nitrogen Fertilizers on CH4 and CO2 Emissions and Soil Organic Carbon in Paddy Fields of Central China

Quantifying carbon (C) sequestration in paddy soils is necessary to help better understand the effect of agricultural practices on the C cycle. The objective of the present study was to assess the effects of tillage practices [conventional tillage (CT) and no-tillage (NT)] and the application of nitrogen (N) fertilizer (0 and 210 kg N ha−1) on fluxes of CH4 and CO2, and soil organic C (SOC) sequestration during the 2009 and 2010 rice growing seasons in central China. Application of N fertilizer significantly increased CH4 emissions by 13%–66% and SOC by 21%–94% irrespective of soil sampling depths, but had no effect on CO2 emissions in either year. Tillage significantly affected CH4 and CO2 emissions, where NT significantly decreased CH4 emissions by 10%–36% but increased CO2 emissions by 22%–40% in both years. The effects of tillage on the SOC varied with the depth of soil sampling. NT significantly increased the SOC by 7%–48% in the 0–5 cm layer compared with CT. However, there was no significant difference in the SOC between NT and CT across the entire 0–20 cm layer. Hence, our results suggest that the potential of SOC sequestration in NT paddy fields may be overestimated in central China if only surface soil samples are considered

Derivation of ecological standards for risk assessment of molybdate in soil

An extensive testing programme on the toxicity of sodium molybdate dihydrate in soil was initiated to comply with the European REACH Regulation. The molybdate toxicity was assayed with 11 different bioassays, 10 different soils, soil chemical studies on aging reactions, and toxicity tests before and after 1-year equilibration in field conditions. Differences in molybdate toxicity among soils were best explained by soil pH and clay content. A correction factor of 2.0 was selected to account for the difference in molybdate toxicity between laboratory and field conditions due to leaching and aging processes. Toxicity thresholds were determined as the HC₅−₅₀ (median hazardous concentration for 5 % of the species, i.e. median 95 % protection level) derived from the species sensitivity distribution of ecotoxicity data after bioavailability corrections. Uncertainty analysis illustrated that the HC₅−₅₀ provides a robust and ecologically relevant predicted no-effect concentration (PNEC) for risk characterisation. The 10th and 90th percentiles for site-specific PNEC values in European agricultural soil are 10.7 and 168 mg Mo kg⁻¹ dry weight respectively based on a large survey of metal concentrations and soil properties in arable land soils. Total soil Mo concentrations in these soils are below corresponding PNEC values at most locations, suggesting no regional risks of molybdate to soil organisms at this scale. The information presented can be used in the EU risk-assessment framework as well as for national and international regulatory purposes for the setting of soil quality criteria based on total molybdenum concentrations, soil pH and clay content.Koen Oorts, Erik Smolders, Steve P. McGrath, Cornelis A.M. van Gestel, Michael J. McLaughlin and Sandra Care

The Availability of Copper in Soils Historically Amended with Sewage Sludge, Manure, and Compost

Metals in soils amended with sewage sludge are typically less available compared with those in soils spiked with soluble metal salts. However, it is unclear if this difference remains in the long term. A survey of copper (Cu) availability was made in soils amended with sewage sludge, manure, and compost, collectively named organic amendments. Paired sets of amended and control soils were collected from 22 field trials where the organic amendments had aged up to 112 yr. Amended soils had higher total Cu concentrations (range, 2–220 mg Cu kg−1; median, 15 mg Cu kg−1) and organic C (range, 1–16 g kg−1; median, 4 g kg−1) than control soils. All samples were freshly spiked with CuCl2, and the toxicity of added Cu to barley was compared between amended and control soils. The toxicity of added Cu was significantly lower in amended soils than in control soil in 15 sets by, on average, a factor of 1.4, suggesting that aged amendments do not largely increase Cu binding sites. The fraction of added Cu that is isotopic exchangeable Cu (labile Cu) was compared between control soils freshly spiked with CuCl2 and amended soils with both soils at identical total Cu concentrations. Copper derived from amendments was significantly less labile (on average 5.9-fold) than freshly added Cu in 18 sets of soils. This study shows that Cu availability after long-term applications of organic amendments is lower than that of freshly added Cu2+ salts, mainly because of its lower availability in the original matrix and ageing reactions than because of increased metal binding sites in soil.Erik Smolders, Koen Oorts, Enzo Lombi, Ilse Schoeters, Yibing Ma, Sharyn Zrna, and Mike J. McLaughli

Aging of nickel added to soils as predicted by soil pH and time

Although aging processes are important in risk assessment for metals in soils, the aging of Ni added to soils has not been studied in detail. In this study, after addition of water soluble Ni to soils, the changes over time in isotopic exchangeability, total concentrations and free Ni(2+) activity in soil pore water, were investigated in 16 European soils incubated outdoors for 18 months. The results showed that after Ni addition, concentrations of Ni in soil pore water and isotopic exchangeability of Ni in soils initially decreased rapidly. This phase was followed by further decreases in the parameters measured but these occurred at slower rates. Increasing soil pH increased the rate and extent of aging reactions. Semi-mechanistic models, based on Ni precipitation/nucleation on soil surfaces and micropore diffusion, were developed and calibrated. The initial fast processes, which were attributed to precipitation/nucleation, occurred over a short time (e.g. 1h), afterwards the slow processes were most likely controlled by micropore diffusion processes. The models were validated by comparing predicted and measured Ni aging in three additional, widely differing soils aged outdoors for periods up to 15 months in different conditions. These models could be used to scale ecotoxicological data generated in short-term studies to longer aging times.Yibing Ma, Enzo Lombi, Mike J. McLaughlin, Ian W. Oliver, Annette L. Nolan, Koen Oorts, Erik Smolder