Assessing the influence of land-use change on the variability of soil chemical properties in semi-arid zone of Ghana

The study aimed at providing basis to consider spatial variability in soil fertility to inform effective decision making in mineral fertilizer recommendations. The study area was classified into six land-use categories using a rural rapid appraisal technique with the aid of the farmers in the community, and by remote sensing satellite imagery (Quick bird). Land-use categories varied significantly in their nutrient, organic carbon content, and stock with coefficient of determination ranging from 0.14 to 0.46. This is reflected in decline in soil nutrient, organic carbon content, and stock with increasing number of years the land was put under cultivation except for permanently cultivated fields. Permanantly cultivated fields were located in the homestead and benefited from nutrient imports from the bush fields. The two farm types also differed significantly with respect to soil nutrients, organic carbon and stock. Soil organic carbon content was 8.2 and 4.5 g kg-1 for the homestead and bushfields, respectively. Soil organic carbon stock estimated for the two farm types were 125 and 74 t ha-1 for the homestead and bush fields, respectively. The study shows a distinct zone of nutrient enhancement within the homestead and bushfields that should be sampled separately when sampling the zone for fertilizer recommendations

Characterization of Soil-Water Retention with Coarse Fragments in the Densu Basin of Ghana

The presence of coarse fragments can have profound impact on soil moisture retention characteristics. The study was conducted to assess the effects of coarse fragments on the moisture retention characteristics of 16 soil series, developed over five different parent materials in the Densu basin. Soil profiles were excavated at five locations, to depths within 1.5 m in the field. Undisturbed soil core samples and disturbed samples were taken in triplicates from the major genetic horizons of each soil type within the effective root depth of 1 m. Coarse fragments content of soil more than 2 mm was measured on mass basis by sieving through a 2-mm mesh. Soil moisture retention was determined using the pressure plate apparatus at suctions of pF 1 (1.0 kPa), pF 2 (10.0 kPa), pF 2.5 (33.0 kPa) and pF 3 (100.0 kPa) for the undisturbed and pF 4.2 (1500 kPa) for the disturbed samples.The volumetric moisture content between field capacity (FC) pF 2.5 (33.0 kPa) and permanent wilting pointing (PWP) pF 4.2 (1500.0 kPa) was used to evaluate the available water content (AWC) by volume and then converted to root zone available water capacity (RZAWC) in millimetres (mm) assuming an effective root depth of 1 m within the basin. Results showed that soils formed over granite and its associations have high percentage of coarse fragments while soils developed over phyllites and its associations have high clay percentage. Soil organic matter was high in the topsoil of all profiles, ranging from 0.81 to 4.44% compared with the horizons below, and the bulk density of the topsoils were less than the limiting value of 1.6 Mg m-3. Site-specific moisture retention characteristics of the various soil series have been delineated. It was evident from the analyses that soils containing high clay content gave high RZAWC values compared with soils with high coarse fragments. Most of the topsoils of the profiles gave high RZAWC values compared with sub-layers with high amounts of coarse fragments. Critical water for plants establishment within the basin in the surface layer was quite favourable

Subjective knowledge, perceived risk, and information search when purchasing a franchise: A comparative exploration from Australia

Franchising has long been a method by which organizations seek to expand and facilitate local market development. However, franchising as a growth strategy can often be hampered by lack of suitable franchisees. To mitigate this shortage, some franchisors have engaged in recruiting franchisees internally from the ranks of their employees in addition to the traditional approach of recruiting franchisees externally. Predominantly franchisees are individuals rather than corporations and thus purchasing a franchise should most commonly be characterized as a consumer acquisition. To explore the relationship between subjective knowledge, perceived risk, and information search behaviors when purchasing a franchise qualitative interviews were conducted with franchisees from the restaurant industry. Half of these respondents were externally recruited having never worked for the franchisor and half were internally recruited having previously been employees of the franchisor. The external recruits expressed a strong desire to own their own business and engaged in extensive decision-making processes with significant information search when purchasing their franchises. Contrastingly, the internal recruits expressed a strong desire to be their own boss and engaged in limited, bordering on habitual decision-making processes with negligible information search when acquiring their franchises. The results reveal that differences in subjective knowledge and perceived risk appear to significantly impact the extent of information search between these two groups. A model of the relationship between subjective knowledge, perceived risk and information search in the purchasing of a franchise is developed that reconciles these findings. The findings also have practical implications for franchisors’ franchisee recruiting efforts which are integral to their capacity to develop local markets

AID Overlapping and Polη Hotspots Are Key Features of Evolutionary Variation Within the Human Antibody Heavy Chain (IGHV) Genes

© Copyright © 2020 Tang, Bagnara, Chiorazzi, Scharff and MacCarthy. Somatic hypermutation (SHM) of the immunoglobulin variable (IgV) loci is a key process in antibody affinity maturation. The enzyme activation-induced deaminase (AID), initiates SHM by creating C → U mismatches on single-stranded DNA (ssDNA). AID has preferential hotspot motif targets in the context of WRC/GYW (W = A/T, R = A/G, Y = C/T) and particularly at WGCW overlapping hotspots where hotspots appear opposite each other on both strands. Subsequent recruitment of the low-fidelity DNA repair enzyme, Polymerase eta (Polη), during mismatch repair, creates additional mutations at WA/TW sites. Although there are more than 50 functional immunoglobulin heavy chain variable (IGHV) segments in humans, the fundamental differences between these genes and their ability to respond to all possible foreign antigens is still poorly understood. To better understand this, we generated profiles of WGCW hotspots in each of the human IGHV genes and found the expected high frequency in complementarity determining regions (CDRs) that encode the antigen binding sites but also an unexpectedly high frequency of WGCW in certain framework (FW) sub-regions. Principal Components Analysis (PCA) of these overlapping AID hotspot profiles revealed that one major difference between IGHV families is the presence or absence of WGCW in a sub-region of FW3 sometimes referred to as “CDR4.” Further differences between members of each family (e.g., IGHV1) are primarily determined by their WGCW densities in CDR1. We previously suggested that the co-localization of AID overlapping and Polη hotspots was associated with high mutability of certain IGHV sub-regions, such as the CDRs. To evaluate the importance of this feature, we extended the WGCW profiles, combining them with local densities of Polη (WA) hotspots, thus describing the co-localization of both types of hotspots across all IGHV genes. We also verified that co-localization is associated with higher mutability. PCA of the co-localization profiles showed CDR1 and CDR2 as being the main contributors to variance among IGHV genes, consistent with the importance of these sub-regions in antigen binding. Our results suggest that AID overlapping (WGCW) hotspots alone or in conjunction with Polη (WA/TW) hotspots are key features of evolutionary variation between IGHV genes

Location and Land use effects on Soil Carbon Accretion and Productivity in the Coastal Savanna Agro-ecological Zone of Ghana

Land use type, climate and soil properties are major determinants of soil carbon storage and productivity, especially in low-input agriculture. In this study, we investigated the interactions among these factors at four (4) locations, namely Accra Metropolis, Ga West, Ga East and Shai Osudoku, within the Coastal-Savannah agro-ecological zone of Ghana. The land use types were maize-based cropping, cassava-based cropping, woodlot/plantations and natural forests. The impact of these on soil productivity at a given location was assessed in terms of soil carbon stocks and a Soil Productivity Index (SPI). The SPI is a composite value derived from routine soil properties such as: soil texture, available water capacity, pH, cation exchange capacity, soil organic carbon, available P, exchangeable K, potentially mineralizable nitrogen, and basic cations, among others. Principal component analysis was used to select soil properties that were used to estimate SPI. The results showed that the locations differed with respect to rainfall regimes and soil types. Locations with slightly heavier soil texture and relatively higher rainfall regimes (Ga East and Shai Osudoku) had significantly higher soil carbon storage and SPI values than the lighter soil textured locations (Accra Metropolis and Ga West). With regards to land use, forest had significantly higher soil carbon storage and SPI than all the other land use types, irrespective of location. The order of soil carbon storage and SPI were: forest > woodlot/plantation > cassava > maize. It was observed that though the Accra Metropolis location hosted the oldest forest, soil carbon was still low, apparently due to the lighter soil texture. We concluded that the soil productivity restorative ability is an interactive effect of carbon management (land use), soil texture and other properties. This interaction hitherto has not been adequately investigated, especially in low-input agriculture

Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells

The transcription factor Oct4 is essential for the maintenance and induction of stem cell pluripotency, but its functional roles are not fully understood. Here, we investigate the functions of Oct4 by depleting and subsequently recovering it in mouse embryonic stem cells (ESCs) and conducting a time-resolved multiomics analysis. Oct4 depletion leads to an immediate loss of its binding to enhancers, accompanied by a decrease in mRNA synthesis from its target genes that are part of the transcriptional network that maintains pluripotency. Gradual decrease of Oct4 binding to enhancers does not immediately change the chromatin accessibility but reduces transcription of enhancers. Conversely, partial recovery of Oct4 expression results in a rapid increase in chromatin accessibility, whereas enhancer transcription does not fully recover. These results indicate different concentration-dependent activities of Oct4. Whereas normal ESC levels of Oct4 are required for transcription of pluripotency enhancers, low levels of Oct4 are sufficient to retain chromatin accessibility, likely together with other factors such as Sox2