Is a Genome a Codeword of an Error-Correcting Code?

Since a genome is a discrete sequence, the elements of which belong to a set of four letters, the question as to whether or not there is an error-correcting code underlying DNA sequences is unavoidable. The most common approach to answering this question is to propose a methodology to verify the existence of such a code. However, none of the methodologies proposed so far, although quite clever, has achieved that goal. In a recent work, we showed that DNA sequences can be identified as codewords in a class of cyclic error-correcting codes known as Hamming codes. In this paper, we show that a complete intron-exon gene, and even a plasmid genome, can be identified as a Hamming code codeword as well. Although this does not constitute a definitive proof that there is an error-correcting code underlying DNA sequences, it is the first evidence in this direction

Plasmidial DNA and TRAV7 gene generation by Hamming codes.

<p>Plasmidial DNA and TRAV7 gene generation by Hamming codes.</p

Permutations associated with labelings , and .

<p>Permutations associated with labelings , and .</p

<i>TRAV7 gene sequence</i> chromosome 14.

<p><i>TRAV7 gene sequence</i> chromosome 14.</p