microsatellite genotypes

microsatellite genotype

Unfiltered_microsatellite_genotypes_CR_mtSTRs_HR_haplotypes

The Excel file ‘Unfiltered_Microsatellite_genotypes_CR_mtSTRs_HR_haplotypes.xlsx’ contains the CR haplotypes, the mtSTRs, the HR haplotypes and genotypes at 13 microsatellite loci of all individuals used in the COLONY2 (Wang 2004, Jones & Wang 2010) analyses to remove putative relatives before the analysis of genetic structur

The "mainparams.txt" file contains the parameters for the STRUCTURE analysis

The file ‘mainparams’ contains the main parameter settings used for the STRUCTURE v2.3 (Pritchard et al. 2000) analysis of genetic structure with the data description for each paramete

Filtered_Microsatellite_genotypes_CR_mtSTRs_HR_haplotypes

The Excel file ‘Filtered_Microsatellite_genotypes_CR_mtSTRs_HR_haplotypes.xlsx’ contains the CR haplotypes, the mtSTRs, the HR haplotypes and genotypes at 13 microsatellite loci of all individuals used in the analyses to detect genetic structure in Arlequin v3.5.2.3 (Excoffier & Lischer 2010, GenAlEX v6.5 (Peakall & Smouse 2006, 2012), STRUCTURE v2.3 (Pritchard et al. 2000) and Geneland (Guillot et al. 2005)

Supplementary tables S1-6 from Vertically transmitted rhabdoviruses are found across three insect families and have dynamic interactions with their hosts

A small number of free-living viruses have been found to be obligately vertically transmitted, but it remains uncertain how widespread vertically transmitted viruses are and how quickly they can spread through host populations. Recent metagenomic studies have found several insects to be infected with sigma viruses (<i>Rhabdoviridae</i>). Here, we report that sigma viruses that infect Mediterranean fruit flies (<i>Ceratitis capitata</i>), <i>Drosophila immigrans</i>, and speckled wood butterflies (<i>Pararge aegeria</i>) are all vertically transmitted. We find patterns of vertical transmission that are consistent with those seen in <i>Drosophila</i> sigma viruses, with high rates of maternal transmission, and lower rates of paternal transmission. This mode of transmission allows them to spread rapidly in populations, and using viral sequence data we found the viruses in <i>D. immigrans</i> and <i>C. capitata</i> had both recently swept through host populations. The viruses were common in nature, with mean prevalences of 12% in <i>C. capitata</i>, 38% in <i>D. immigrans</i> and 74% in <i>P. aegeria</i>. We conclude that vertically transmitted rhabdoviruses may be widespread in a broad range of insect taxa, and that these viruses can have dynamic interactions with their hosts