HTA: A Scalable High-Throughput Accelerator for Irregular HPC Workloads

We propose a new architecture called HTA for high throughput irregular HPC applications with little data reuse. HTA reduces the contention within the memory system with the help of a partitioned memory controller that is amenable for 2.5D implementation using Silicon Photonics. In terms of scalability, HTA supports 4 × higher number of compute units compared to the state-of-the-art GPU systems. Our simulation-based evaluation on a representative set of HPC benchmarks shows that the proposed design reduces the queuing latency by 10% to 30%, and improves the variability in memory access latency by 10% to 60%. Our results show that the HTA improves the L1 miss penalty by 2.3 × to 5 × over GPUs. When compared to a multi-GPU system with the same number of compute units, our simulation results show that the HTA can provide up to 2 × speedup

LLM: Realizing Low-Latency Memory by Exploiting Embedded Silicon Photonics for Irregular Workloads

As emerging workloads exhibit irregular memory access patterns with poor data reuse and locality, they would benefit from a DRAM that achieves low latency without sacrificing bandwidth and energy efficiency. We propose LLM (Low Latency Memory), a codesign of the DRAM microarchitecture, the memory controller and the LLC/DRAM interconnect by leveraging embedded silicon photonics in 2.5D/3D integrated system on chip. LLM relies on Wavelength Division Multiplexing (WDM)-based photonic interconnects to reduce the contention throughout the memory subsystem. LLM also increases the bank-level parallelism, eliminates bus conflicts by using dedicated optical data paths, and reduces the access energy per bit with shorter global bitlines and smaller row buffers. We evaluate the design space of LLM for a variety of synthetic benchmarks and representative graph workloads on a full-system simulator (gem5). LLM exhibits low memory access latency for traffics with both regular and irregular access patterns. For irregular traffic, LLM achieves high bandwidth utilization (over 80% peak throughput compared to 20% of HBM2.0). For real workloads, LLM achieves 3 × and 1.8 × lower execution time compared to HBM2.0 and a state-of-the-art memory system with high memory level parallelism, respectively. This study also demonstrates that by reducing queuing on the data path, LLM can achieve on average 3.4 × lower memory latency variation compared to HBM2.0

Isolation and culture of protoplasts from the medicinal plants Centella asiatica

In the present investigation, protoplasts were isolated from cell suspensions initiated from leaf laminae and petioles using an enzyme mixture consisting of 1.5% (w/v) Cellulase R10, 1.0% (w/v) Macerozyme R10 and 0.5% (w/v) Driselase in CPW salts solution with 13% (w/v) mannitol as osmotic stabilizer. Yields and viabilities of isolated protoplasts were 1.2 x 105 ± 0.1 g-1 fresh weight and 20.8 ± 4.4% for protoplasts from lamina-derived cell suspensions and 7.9 x 105 ± 1.5 g-1 fresh weight and 79.3 ± 13.4% for protoplasts from petiole-derived cell suspensions. Protoplasts from lamina explant-derived cell suspensions were cultured at plating densities of 0.25 x 105 – 2.0 x 105 protoplasts ml-1 in half-strength B5 based medium containing 0.1 mgl-1 2,4-dichlorophenoxyacetic acid (2,4-D) and 0.3 mgl1 zeatin, dispensed as semi-solid agarose droplets (each approx. 70 µl in volume) in 5.5 cm diameter Petri dishes (10 droplets per dish). First mitotic divisions of protoplast-derived cells were observed after 4 d of culture at an optimum plating density of 0.5 x 105 protoplasts ml-1, giving an initial plating efficiency at this time of 12.7 ± 0.6%. After 42 d of culture, protoplast-derived cell colonies were creamy-white in colour and each approx. 1 mm in diameter, with a final plating efficiency of 0.6 ± 0.2%. Cell colonies transferred to semi-solid proliferation medium containing 2,4-D (4.0 mgl-1) and zeatin (0.2 mgl-1) were creamy-yellow in appearance, whereas colonies cultured on medium devoid of these growth regulators became light green and compact. In the case of protoplasts from petiole-derived cell suspensions, culture in Murashige and Skoog (1962)-based medium supplemented with 2.0 mgl-1 alpha-naphthaleneacetic acid and 0.5 mgl-1 6-benzylaminopurine resulted in an initial plating efficiency of 19.3 ± 4.2% at an optimum plating density of 1.0 x 105 protoplasts ml-1. However, mitotic division was not sustained after this stage. Plant regeneration studies are on-going from protoplasts isolated from lamina-derived cell suspensions

Cultural theory and the dynamics of organizational change: the response of housing associations in London to the Housing Act 1988

The aim of this article is to consider the most effective way of conceptualizing a sector that has undergone radical change: the UK voluntary housing sector. The article considers existing accounts of housing associations and classifies these into five analytically distinct groups: practitioners, historical accounts, managerialist approaches, network theorists and institutionalist accounts. The main contention is that each of these is limited in explanatory potential, primarily due to their neglect of culture. This article proposes a more detailed framework for developing an understanding of the substantial changes affecting housing associations since the 1980s; that offered by "grid-group cultural theory". The article provides longitudinal qualitative data obtained from London housing associations to support the contention that organizational change can most usefully be understood by reference to the cultural themes of hierarchy and individualism. The article contends that cultural theory offers the opportunity to develop a systematic analysis that accounts for institutional history and organizational differentiation

Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States

In the United States, serogroup Y, ST-23 clonal complex Neisseria meningitidis was responsible for an increase in meningococcal disease incidence during the 1990s. This increase was accompanied by antigenic shift of three outer membrane proteins, with a decrease in the population that predominated in the early 1990s as a different population emerged later in that decade. To understand factors that may have been responsible for the emergence of serogroup Y disease, we used whole genome pyrosequencing to investigate genetic differences between isolates from early and late N. meningitidis populations, obtained from meningococcal disease cases in Maryland in the 1990s. The genomes of isolates from the early and late populations were highly similar, with 1231 of 1776 shared genes exhibiting 100% amino acid identity and an average πN = 0.0033 and average πS = 0.0216. However, differences were found in predicted proteins that affect pilin structure and antigen profile and in predicted proteins involved in iron acquisition and uptake. The observed changes are consistent with acquisition of new alleles through horizontal gene transfer. Changes in antigen profile due to the genetic differences found in this study likely allowed the late population to emerge due to escape from population immunity. These findings may predict which antigenic factors are important in the cyclic epidemiology of meningococcal disease

Massive Nest-Box Supplementation Boosts Fecundity, Survival and Even Immigration without Altering Mating and Reproductive Behaviour in a Rapidly Recovered Bird Population

Habitat restoration measures may result in artificially high breeding density, for instance when nest-boxes saturate the environment, which can negatively impact species' demography. Potential risks include changes in mating and reproductive behaviour such as increased extra-pair paternity, conspecific brood parasitism, and polygyny. Under particular cicumstances, these mechanisms may disrupt reproduction, with populations dragged into an extinction vortex. With the use of nuclear microsatellite markers, we investigated the occurrence of these potentially negative effects in a recovered population of a rare secondary cavity-nesting farmland bird of Central Europe, the hoopoe (Upupa epops). High intensity farming in the study area has resulted in a total eradication of cavity trees, depriving hoopoes from breeding sites. An intensive nest-box campaign rectified this problem, resulting in a spectacular population recovery within a few years only. There was some concern, however, that the new, high artificially-induced breeding density might alter hoopoe mating and reproductive behaviour. As the species underwent a serious demographic bottleneck in the 1970–1990s, we also used the microsatellite markers to reconstitute the demo-genetic history of the population, looking in particular for signs of genetic erosion. We found i) a low occurrence of extra-pair paternity, polygyny and conspecific brood parasitism, ii) a high level of neutral genetic diversity (mean number of alleles and expected heterozygosity per locus: 13.8 and 83%, respectively) and, iii) evidence for genetic connectivity through recent immigration of individuals from well differentiated populations. The recent increase in breeding density did thus not induce so far any noticeable detrimental changes in mating and reproductive behaviour. The demographic bottleneck undergone by the population in the 1970s-1990s was furthermore not accompanied by any significant drop in neutral genetic diversity. Finally, genetic data converged with a concomitant demographic study to evidence that immigration strongly contributed to local population recovery

Exploring Web-Based University Policy Statements on Plagiarism by Research-Intensive Higher Education Institutions

Plagiarism may distress universities in the US, but there is little agreement as to exactly what constitutes plagiarism. While there is ample research on plagiarism, there is scant literature on the content of university policies regarding it. Using a systematic sample, we qualitatively analyzed 20 Carnegie-classified universities that are “Very High in Research.” This included 15 public state universities and five high-profile private universities. We uncovered highly varied and even contradictory policies at these institutions. Notable policy variations existed for verbatim plagiarism, intentional plagiarism and unauthorized student collaboration at the studied institutions. We conclude by advising that the American Association of University Professors (AAUP), the American Association of Colleges and Universities (AACU) and others confer and come to accord on the disposition of these issues