Methane-Oxidizing Seawater Microbial Communities from an Arctic Shelf

Marine microbial communities can consume dissolved methane before it can escape to the atmosphere and contribute to global warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to atmospheric equilibrium. This methane originates in sediment, permafrost, and hydrate. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1 , approximately 4.8 times oversaturated relative to atmospheric equilibrium. The group of methaneoxidizing bacteria (MOB) in the natural seawater and incubated seawater was \u3e 97 % dominated by Methylococcales (γ -Proteobacteria). Incubations of seawater under a range of methane concentrations led to loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were 4 times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotroph sequences correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. Total MOB abundances were very low in sea ice, with maximal fractions found at the ice– snow interface (0.1 %), while non-MOB methylotrophs were present in abundances similar to natural seawater communities. The dissimilarities in MOB taxa, methane concentrations, and stable isotope ratios between the sea ice and water column point toward different methane dynamics in the two environments

Measurements and analysis of the upper critical field Hc2H_{c2} on an underdoped and overdoped La2−xSrxCuO4La_{2-x}Sr_xCuO_4 compounds

The upper critical field $H_{c2}$ is one of the many non conventional properties of high-$T_c$ cuprates. It is possible that the $H_{c2}(T)$ anomalies are due to the presence of inhomogeneities in the local charge carrier density $\rho$ of the $CuO_2$ planes. In order to study this point, we have prepared good quality samples of polycrystalline $La_{2-x}Sr_xCuO_{4}$ using the wet-chemical method, which has demonstrated to produce samples with a better cation distribution. In particular, we have studied the temperature dependence of the second critical field, $H_{c2}(T)$, through the magnetization measurements on two samples with opposite average carrier concentration ($\rho_m=x$) and nearly the same critical temperature, namely $\rho_m = 0.08$ (underdoped) and $\rho_m = 0.25$ (overdoped). The results close to $T_c$ do not follow the usual Ginzburg-Landau theory and are interpreted by a theory which takes into account the influence of the inhomogeneities.Comment: Published versio

Protein Pattern Formation

Protein pattern formation is essential for the spatial organization of many intracellular processes like cell division, flagellum positioning, and chemotaxis. A prominent example of intracellular patterns are the oscillatory pole-to-pole oscillations of Min proteins in \textit{E. coli} whose biological function is to ensure precise cell division. Cell polarization, a prerequisite for processes such as stem cell differentiation and cell polarity in yeast, is also mediated by a diffusion-reaction process. More generally, these functional modules of cells serve as model systems for self-organization, one of the core principles of life. Under which conditions spatio-temporal patterns emerge, and how these patterns are regulated by biochemical and geometrical factors are major aspects of current research. Here we review recent theoretical and experimental advances in the field of intracellular pattern formation, focusing on general design principles and fundamental physical mechanisms.Comment: 17 pages, 14 figures, review articl

Unusual magnetic-field dependence of partially frustrated triangular ordering in manganese tricyanomethanide

Manganese tricyanomethanide, Mn[C(CN)3]2, consists of two interpenetrating three-dimensional rutile-like networks. In each network, the tridentate C(CN)3- anion gives rise to superexchange interactions between the Mn2+ ions (S=5/2) that can be mapped onto the "row model" for partially frustrated triangular magnets. We present heat capacity measurements that reveal a phase transition at T_N = 1.18K, indicative of magnetic ordering. The zero-field magnetically ordered structure was solved from neutron powder diffraction data taken between 0.04 and 1.2 K. It consists of an incommensurate spiral with a temperature independent propagation vector Q=(2Q 0 0)=(+/-0.622 0 0), where different signs relate to the two different networks. This corresponds to (+/-0.311 +/-0.311 0) in a quasi-hexagonal representation. The ordered moment mu=3.3mu_B is about 2/3 of the full Mn2+ moment. From the values of T_N and Q, the exchange parameters J/k = 0.15 K and J'/J = 0.749 are estimated. The magnetic-field dependence of the intensity of the Bragg reflection, measured for external fields H||Q, indicates the presence of three different magnetic phases. We associate them with the incommensurate spiral (H < 13.5 kOe), an intermediate phase (13.5 kOe 16 kOe) proposed for related compounds. For increasing fields, Q continuously approaches the value 1/3, corresponding to the commensurate magnetic structure of the fully frustrated triangular lattice. This value is reached at H_c = 19 kOe. At this point, the field-dependence reverses and Q adopts a value of 0.327 at 26 kOe, the highest field applied in the experiment. Except for H_c, the magnetic ordering is incommensurate in all three magnetic phases of Mn[C(CN)3]2.Comment: accepted for publication in J. Phys.: Condens. Matte

Sea-ice production and air/ice/ocean/biogeochemistry interactions in the Ross Sea during the PIPERS 2017 autumn field campaign

The Ross Sea is known for showing the greatest sea-ice increase, as observed globally, particularly from 1979 to 2015. However, corresponding changes in sea-ice thickness and production in the Ross Sea are not known, nor how these changes have impacted water masses, carbon fluxes, biogeochemical processes and availability of micronutrients. The PIPERS project sought to address these questions during an autumn ship campaign in 2017 and two spring airborne campaigns in 2016 and 2017. PIPERS used a multidisciplinary approach of manned and autonomous platforms to study the coupled air/ice/ocean/biogeochemical interactions during autumn and related those to spring conditions. Unexpectedly, the Ross Sea experienced record low sea ice in spring 2016 and autumn 2017. The delayed ice advance in 2017 contributed to (1) increased ice production and export in coastal polynyas, (2) thinner snow and ice cover in the central pack, (3) lower sea-ice Chl-a burdens and differences in sympagic communities, (4) sustained ocean heat flux delaying ice thickening and (5) a melting, anomalously southward ice edge persisting into winter. Despite these impacts, airborne observations in spring 2017 suggest that winter ice production over the continental shelf was likely not anomalous

Gas diffusion through columnar laboratory sea ice: implications for mixed-layer ventilation of CO₂ in the seasonal ice zone

Gas diffusion through the porous microstructure of sea ice represents a pathway for ocean–atmosphere exchange and for transport of biogenic gases produced within sea ice. We report on the experimental determination of the bulk gas diffusion coefficients, D, for oxygen (O2) and sulphur hexafluoride (SF6) through columnar sea ice under constant ice thickness conditions for ice surface temperatures between -4 and -12 °C. Profiles of SF6 through the ice indicate decreasing gas concentration from the ice/water interface to the ice/air interface, with evidence for solubility partitioning between gas-filled and liquid-filled pore spaces. On average, DSF6 inline image was 1.3 × 10-4 cm2 s-1 (±40%) and DO2 was 3.9 × 10-5 cm2 s-1 (±41%). The preferential partitioning of SF6 to the gas phase, which is the dominant diffusion pathway produced the greater rate of SF6 diffusion. Comparing these estimates of D with an existing estimate of the air–sea gas transfer through leads indicates that ventilation of the mixed layer by diffusion through sea ice may be negligible, compared to air–sea gas exchange through fractures in the ice pack, even when the fraction of open water is less than 1%

Quasi Harmonic Lattice Dynamics and Molecular Dynamics calculations for the Lennard-Jones solids

We present Molecular Dynamics (MD), Quasi Harmonic Lattice Dynamics (QHLD) and Energy Minimization (EM) calculations for the crystal structure of Ne, Ar, Kr and Xe as a function of pressure and temperature. New Lennard-Jones (LJ) parameters are obtained for Ne, Kr and Xe to reproduce the experimental pressure dependence of the density. We employ a simple method which combines results of QHLD and MD calculations to achieve densities in good agreement with experiment from 0 K to melting. Melting is discussed in connection with intrinsic instability of the solid as given by the QHLD approximation. (See http://www.fci.unibo.it/~valle for related papers)Comment: 7 pages, 5 figures, REVte