Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency

Residual feed intake (RFI) is a measure of feed efficiency, in which low RFI denotes improved feed efficiency. Caloric restriction (CR) is associated with feed efficiency in livestock species and to human health benefits, such as longevity and cancer prevention. We have developed pig lines that differ in RFI, and we are interested in identifying the genes and pathways that underlie feed efficiency. Prepubertal Yorkshire gilts with low RFI (n = 10) or high RFI (n = 10) were fed ad libitum or fed at restricted intake of 80% of maintenance energy requirements for 8 days. We measured serum metabolites and hormones and generated transcriptional profiles of liver and subcutaneous adipose tissue on these animals. Overall, 6,114 genes in fat and 305 genes in liver were differentially expressed (DE) in response to CR, and 311 genes in fat and 147 genes in liver were DE due to RFI differences. Pathway analyses of CR-induced DE genes indicated a dramatic switch to a conservation mode of energy usage by down-regulating lipogenesis and steroidogenesis in both liver and fat. Interestingly, CR altered expression of genes in immune and cell cycle/apoptotic pathways in fat, which may explain part of the CR-driven lifespan enhancement. In silico analysis of transcription factors revealed ESR1 as a putative regulator of the adaptive response to CR, as several targets of ESR1 in our DE fat genes were annotated as cell cycle/apoptosis genes. The lipid metabolic pathway was overrepresented by down-regulated genes due to both CR and low RFI. We propose a common energy conservation mechanism, which may be controlled by PPARA, PPARG, and/or CREB in both CR and feed-efficient pigs

Implications of Arm Restraint on Lower Extremity Kinetics During Gait

Background Literature indicates the importance of the upper extremities in providing stability and propulsion for the body during ambulation. However, the kinetic implications of upper extremity restraint during gait are not as well documented. Aim The objective of this study was to examine the effect of arm restraint (unilateral and bilateral) on lower extremity joint kinetics during walking. Methods Twenty-three healthy young participants were instrumented for three dimensional motion analysis, and tested in four randomly ordered upper extremity restraint conditions (unrestrained, bilateral restraint, right side restraint, and left side restraint). Temporal spatial parameters and gait/phase-specific lower extremity kinetics and kinematics were measured. For each restraint condition, pointwise differences from the unrestrained condition were compared using a two-way ANOVA model of restraint condition (“Condition”) and gait cycle phase (“Timing”). Results Decreases in walking speed and stride length were observed for all restraint conditions. Differences in kinetic demands were also noted, primarily at the hip and knee. Conclusion Upper extremity restraint in healthy young adults leads to significant changes in temporal-spatial parameters and proximal joint kinetics, most prominently during periods of load accommodation and balance

A Catalog of Spectroscopically Confirmed White Dwarfs from the Sloan Digital Sky Survey Data Release 4

We present a catalog of 9316 spectroscopically confirmed white dwarfs from the Sloan Digital Sky Survey Data Release 4. We have selected the stars through photometric cuts and spectroscopic modeling, backed up by a set of visual inspections. Roughly 6000 of the stars are new discoveries, roughly doubling the number of spectroscopically confirmed white dwarfs. We analyze the stars by performing temperature and surface gravity fits to grids of pure hydrogen and helium atmospheres. Among the rare outliers are a set of presumed helium-core DA white dwarfs with estimated masses below 0.3 Msun, including two candidates that may be the lowest masses yet found. We also present a list of 928 hot subdwarfs.Comment: Accepted by the Astrophysical Journal Supplements, 25 pages, 24 figures, LaTeX. The electronic catalog, as well as diagnostic figures and links to the spectra, is available at http://das.sdss.org/wdcat/dr4

Discovery of New Ultracool White Dwarfs in the Sloan Digital Sky Survey

We report the discovery of five very cool white dwarfs in the Sloan Digital Sky Survey (SDSS). Four are ultracool, exhibiting strong collision induced absorption (CIA) from molecular hydrogen and are similar in color to the three previously known coolest white dwarfs, SDSS J1337+00, LHS 3250 and LHS 1402. The fifth, an ultracool white dwarf candidate, shows milder CIA flux suppression and has a color and spectral shape similar to WD 0346+246. All five new white dwarfs are faint (g > 18.9) and have significant proper motions. One of the new ultracool white dwarfs, SDSS J0947, appears to be in a binary system with a slightly warmer (T_{eff} ~ 5000K) white dwarf companion.Comment: 15 pages, 3 figures, submitted to ApJL. Higher resolution versions of finding charts are available at http://astro.uchicago.edu/~gates/findingchart

Hdelta-Selected Galaxies in the Sloan Digital Sky Survey I: The Catalog

[Abridged] We present here a new and homogeneous sample of 3340 galaxies selected from the Sloan Digital Sky Survey (SDSS) based solely on the observed strength of their Hdelta absorption line. These galaxies are commonly known as ``post-starburst'' or ``E+A'' galaxies, and the study of these galaxies has been severely hampered by the lack of a large, statistical sample of such galaxies. In this paper, we rectify this problem by selecting a sample of galaxies which possess an absorption Hdelta equivalent width of EW(Hdelta_max) - Delta EW(Hdelta_max) > 4A from 106682 galaxies in the SDSS. We have performed extensive tests on our catalog including comparing different methodologies of measuring the Hdelta absorption and studying the effects of stellar absorption, dust extinction, emission-filling and measurement error. The measured abundance of our Hdelta-selected (HDS) galaxies is 2.6 +/- 0.1% of all galaxies within a volume-limited sample of 0.05<z<0.1 and M(r*)<-20.5, which is consistent with previous studies of such galaxies in the literature. We find that only 25 of our HDS galaxies in this volume-limited sample (3.5+/-0.7%) show no evidence for OII and Halpha emission, thus indicating that true E+A (or k+a) galaxies are extremely rare objects at low redshift, i.e., only 0.09+/-0.02% of all galaxies in this volume-limited sample are true E+A galaxies. In contrast, 89+/-5% of our HDS galaxies in the volume-limited sample have significant detections of the OII and Halpha emission lines. We find 27 galaxies in our volume-limited HDS sample that possess no detectable OII emission, but do however possess detectable Halpha emission. These galaxies may be dusty star-forming galaxies. We provide the community with this new catalog of Hdelta-selected galaxies to aid in the understanding of these galaxies.Comment: Submitted to PASJ. Catalog of galaxies available at http://astrophysics.phys.cmu.edu/~tomo/ea

Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant

Transcriptional profiling coupled with blood metabolite analyses were used to identify porcine genes and pathways that respond to a fasting treatment or to a D298N missense mutation in the melanocortin-4 receptor (MC4R) gene. Gilts (12 homozygous for D298 and 12 homozygous for N298) were either fed ad libitum or fasted for 3 days. Fasting decreased body weight, backfat, and serum urea concentration and increased serum nonesterified fatty acid. In response to fasting, 7,029 genes in fat and 1,831 genes in liver were differentially expressed (DE). MC4R genotype did not significantly affect gene expression, body weight, backfat depth, or any measured serum metabolite concentration. Pathway analyses of fasting-induced DE genes indicated that lipid and steroid synthesis was downregulated in both liver and fat. Fasting increased expression of genes involved in glucose sparing pathways, such as oxidation of amino acids and fatty acids in liver, and in extracellular matrix pathways, such as cell adhesion and adherens junction in fat. Additionally, we identified DE transcription factors (TF) that regulate many DE genes. This confirms the involvement of TF, such as PPARG, SREBF1, and CEBPA, which are known to regulate the fasting response, and implicates additional TF, such as ESR1. Interestingly, ESR1 controls several fasting induced genes in fat that are involved in cell matrix morphogenesis. Our findings indicate a transcriptional response to fasting in two key metabolic tissues of pigs, which was corroborated by changes in blood metabolites, and the involvement of novel putative transcriptional regulators in the immediate adaptive response to fasting

Sloan Digital Sky Survey Multicolor Observations of GRB010222

The discovery of an optical counterpart to GRB010222 (detected by BeppoSAX; Piro 2001) was announced 4.4 hrs after the burst by Henden (2001a). The Sloan Digital Sky Survey's 0.5m photometric telescope (PT) and 2.5m survey telescope were used to observe the afterglow of GRB010222 starting 4.8 hours after the GRB. The 0.5m PT observed the afterglow in five, 300 sec g' band exposures over the course of half an hour, measuring a temporal decay rate in this short period of F_nu \propto t^{-1.0+/-0.5}. The 2.5m camera imaged the counterpart nearly simultaneously in five filters (u' g' r' i' z'), with r' = 18.74+/-0.02 at 12:10 UT. These multicolor observations, corrected for reddening and the afterglow's temporal decay, are well fit by the power-law F_nu \propto nu^{-0.90+/-0.03} with the exception of the u' band UV flux which is 20% below this slope. We examine possible interpretations of this spectral shape, including source extinction in a star forming region.Comment: 8 pages, 4 figures, accepted for publication in ApJ. Two figures added, minor changes to text in this draft. Related material can be found at: http://sdss.fnal.gov:8000/grb

SDSSJ103913.70+533029.7: A Super Star Cluster in the Outskirts of a Galaxy Merger

We describe the serendipitous discovery in the spectroscopic data of the Sloan Digital Sky Survey of a star-like object, SDSSJ103913.70+533029.7, at a heliocentric radial velocity of +1012 km/s. Its proximity in position and velocity to the spiral galaxy NGC 3310 suggests an association with the galaxy. At this distance, SDSSJ103913.70+533029.7 has the luminosity of a super star cluster and a projected distance of 17 kpc from NGC 3310. Its spectroscopic and photometric properties imply a mass of > 10^6 solar masses and an age close to that of the tidal shells seen around NGC 3310, suggesting that it formed in the event which formed the shells.Comment: Accepted by AJ: 4 figures (1 color

An Improved Photometric Calibration of the Sloan Digital Sky Survey Imaging Data

We present an algorithm to photometrically calibrate wide field optical imaging surveys, that simultaneously solves for the calibration parameters and relative stellar fluxes using overlapping observations. The algorithm decouples the problem of "relative" calibrations, from that of "absolute" calibrations; the absolute calibration is reduced to determining a few numbers for the entire survey. We pay special attention to the spatial structure of the calibration errors, allowing one to isolate particular error modes in downstream analyses. Applying this to the Sloan Digital Sky Survey imaging data, we achieve ~1% relative calibration errors across 8500 sq.deg. in griz; the errors are ~2% for the u band. These errors are dominated by unmodelled atmospheric variations at Apache Point Observatory. These calibrations, dubbed "ubercalibration", are now public with SDSS Data Release 6, and will be a part of subsequent SDSS data releases.Comment: 16 pages, 17 figures, matches version accepted in ApJ. These calibrations are available at http://www.sdss.org/dr