The Biological Flora of Coastal Dunes and Wetlands: Avicennia germinans (L.) L.

Avicennia germinans (L.) L. is a pantropical, subtropical, and occasionally warm-temperate mangrove species that occurs on shorelines that have a broad horizontal tidal range. Also known as black mangrove, stands typically develop under anoxic, water-logged conditions in substrates of silt or clay. Black mangrove can tolerate salinity values ranging from 0 to 90 parts per thousand. Salt is excreted from salt glands on both leaf epidermal surfaces, and aerosol salt spray and salt crystals are frequently observed on the upper leaf epidermis. Avicennia germinans is viviparous. The embryos have no dormancy requirements, and there is no seed bank. This mangrove species has the northernmost distributional range of any mangrove species in North America. It occurs in Louisiana and northern Florida. Color-infrared photography and airborne video imagery techniques have been used successfully to map stands of black mangrove on subtropical coastal shorelines. Reforestation efforts using seedlings and saplings have been successful in several areas of the tropics and subtropics. Avicennia germinans stands play an important role in ecosystem functions as a natural barrier to coastal erosion caused by tropical storms, as habitat for a wide range of organisms in intertidal food chains, and as a carbon repository

Dune and Vegetation Stability at South Padre Island, Texas, United States of America

Padre Island is the longest of five barrier islands occurring along the Texas Gulf Coast. South Padre Island is separated from the northern two-thirds of the island by the Mansfield Channel. The composition and pattern of vegetation on South Padre Island are relatively well known, but data on the interrelationship of dune and vegetation stability are lacking. We hypothesized that (1) there should be an inverse relationship between elevation change and percent cover on transects across the nearshore dunes of South Padre Island; and (2) percent cover, species composition, and species importance should be most stable where elevation change was least. We tested these hypotheses using three study sites differing in vegetation abundance. Elevation measurements were taken at 1.0-m intervals along three transects at each site using survey-grade Global Positioning System equipment. Vegetation abundance was determined in 10-m intervals along each transect. No sites or topographic zones were devoid of elevation change. Even a site that had a mean percent cover of 65.1% had a mean elevation change of 15.6 cm. However, cover does not have to be great to provide considerable stability. There was no significant difference in elevation change at Site 1, where cover was 57%, and Site 2, where cover was only 12.5%. As hypothesized, there was a significant inverse correlation between elevation change and percent cover when analyzed over all transects and sites, but the relationship did not hold for all sites or topographic zones when these were examined separately. Lack of correlation may be due to differences among sites and zones in the number of different perturbations and their intensities and frequencies. Only Site 2 showed a significant difference in percent cover between the initial and final samples. Species composition and importance were more stable where elevation changes were low

Survivorship and Growth Among Three Developmental Stages of Black Mangrove (Avicennia germinans) Seedlings in Southernmost Texas

Black mangrove is useful for shoreline stabilization in Texas and Mexico but there is insufficient information regarding propagule survivorship and seedling growth. We compared survivorship and growth of three develop-mental groups of black mangrove seedlings planted on three dredge spoil islands in the Lower Laguna Madre of Texas, to better understand optimum planting strategy. Each spoil island had 100 seedlings without emergent radicles, 100 seedlings with emergent radicles, and 75 head-started seedlings. Survivorship of seedlings with and with-out emergent radicles was low, (0-16%). Survivorship of head-started seedlings was higher, (60 – 62.7%). Varia-tion in survivorship among developmental categories was significant but variation among islands was not. The 16 surviving seedlings with emergent radicles censused 346 days after planting were similar in mean height (32.9 cm) and mean number of pairs of leaves (13.2) to head-started seedlings grown for 376 days (105 days in nursery, 271 days on Island 1). Growth rates for height ranged from 0.041 cm/day to 0.058 cm/day. Growth in mean pairs of leaves ranged from 0.042 pairs/day to 0.051 pairs/day. Comparison of the person-days required to have 300 seed-lings alive one year after field planting shows that head-starting is clearly the preferable planting strategy

Biological Flora of the Tropical and Subtropical Intertidal Zone: Literature Review for Rhizophora mangle L.

Rhizophora mangle L. is a tropical and subtropical mangrove species that occurs as a dominant tree species in the intertidal zone of low-energy shorelines. Rhizophora mangle plays an important role in coastal zones as habitat for a wide range of organisms of intertidal food webs, as a natural barrier to coastal erosion, and as carbon sequestration. A review of mangrove literature has been performed, but a review specifically on red mangroves has not. The approach was to cover a broad range of topics with a focus on topics that have seen significant work since the 1970s. This review includes a brief introduction to red mangroves and then focuses on the following topics: biogeography, habitats and zonation, geomorphological interactions, taxonomy, histology, anatomy, physiological ecology, productivity, biomass, litter, reproduction, population biology, plant communities, interactions with other species, impacts of storms, reforestation, remote sensing, modelling, and economic importance

Detection of Temporal Changes in Vegetative Cover on South Padre Island, Texas Using Image Classifications Derived from Aerial Color-Infrared Photographs

Supervised image classifications developed from 23 x 23 cm aerial color-infrared aerial photographs (1:5,000 scale) were used to evaluate temporal changes in vegetative cover occurring within three 150 x 300-m research sites on South Padre Island, Texas. Use of high-resolution digitized imagery (ground pixel resolution of ca. 0.1 m) and survey-grade GPS for positional measurements of ground control points (20-25 1.0m2 targets within each research site) resulted in consistently high levels of geometric accuracy, with root mean square errors (RMSEs) ranging between 0.397 – 2.867. Similarly, use of relatively simple information categories (dry and wet sand, live and dead vegetative cover, and water) resulted in supervised image classifications with consistently high levels of overall thematic accuracy (90.0 – 98.0%). Temporal comparisons of image classifications using a cross-tabulation procedure indicated that changes in total vegetative cover had been minimal at most locations during the course the two-year study (2003-2005). However, a localized but significant disruption of native vegetation caused by the dumping of sand by highway maintenance crews was detected in one of the study sites (2004), and ground inspection revealed numerous other sand-dumping sites at various locations on the barrier island. In the first situation, comparison of CIR aerial photographs acquired before and after the sand-dumping incident provided a reliable means by which to evaluate the extent of damage caused by the dumped sand, and to monitor its eventual recovery as a result of recolonization by native plant species

Factors Affecting the Spatial Distribution of Black Mangrove on the Dredged-Material or “Spoil” Islands in the Lower Laguna Madre of Texas

Research was conducted to evaluate the spatial distribution of black mangrove (Avicennia germinans) on the dredged-material or “spoil” islands of the Lower Laguna Madre of Texas. Aerial color-infrared (CIR) photographs revealed the presence of black mangrove stands on many of the islands located south of the Arroyo Colorado (a distributary of the Rio Grande which empties into the Laguna Madre), but failed to detect significant mangrove stands on islands located north of the Arroyo. Analysis of CIR photographs and supervised image classifications for individual islands suggested a concentration of black mangrove along western shorelines and relatively low interior areas of islands, although relatively small and localized mangrove stands were clearly evident along eastern shorelines at several locations. These observations were consistent with ground surveys which indicated significantly higher mangrove densities along western vs eastern shorelines of selected islands (0.6 and 0.1 plants/m2, respectively; P \u3c 0.05), but no difference between ratios of small to large plants in stands located along western vs eastern shorelines (1.6 and 1.4, respectively; P\u3e0.05). The most plausible explanation for these trends is that wave action caused by prevailing southeasterly winds during most of the year may impede or prevent the establishment of black mangrove propagules (germinated „seeds‟) along eastern shorelines of islands which otherwise constitute suitable habitat for A. germinans. If this interpretation is correct, development of planting strategies designed to facilitate establishment of black mangrove stands along shorelines subject to turbulent wave action will be a requisite to the use of this important native plant species for erosion prevention and mitigation on spoil islands in the Lower Laguna Madre

Vegetative Change on South Padre Island, Texas, over Twenty Years and Evaluation of Multispectral Videography in Determining Vegetative Cover and Species Identity

A comparative vegetation analysis of an island-wide transect of South Padre Island, Texas, was conducted in 1997 using aerial multispectral digital videography and line intercept ground truth techniques to assess the usefulness of videography in estimating vegetative cover and species identifications. Ground truth data were used to assess vegetative change occurring in the 20 years since the report of Judd et al. (1977) on the vegetation of South Padre Island. Estimates of total cover by ground truth and remote sensing techniques were similar (2.45% difference) on South Padre Island. Thus, airborne multispectral digital videography is an effective technique for assessing changes in total vegetative cover of Texas barrier islands. This technique will be an effective tool for documenting changes in total cover on barrier islands due to natural perturbations such as hurricanes and human disturbances including vehicular traffic. Imagery obtained at altitudes of 200 m or greater did not permit discrimination of dominant species in each of an island\u27s topographic zones. However, acquisition of imagery at a time of the year when dominant species are in specific phenological stages, such as flowering, and at a lower altitude may facilitate their recognition. Comparison of data from a single trans-island transect in 1997 with data from three trans-island transects and 18 transects across the foreshore, backshore, and primary dunes in 1977 suggests that there has been a marked decrease in species richness of the backshore and primary dune zones of South Padre Island. There also was a change in dominant species in the backshore zone. These changes in species richness and dominance may be largely attributable to vehicular traffic in these zones. - Un análisis comparativo de la vegetación de un transecto transinsular de la isla South Padre en el estado de Texas fue realizado en 1997 usando videografía aérea multiesprectral digital y técnicas de validación de intercepción linear terrestre para evaluar la utilidad de la videografía en la estimación de la cobertura vegetal e identificación de especies. Los datos de estudios de validación terrestre fueron utilizados para evaluar el cambio vegetativo que ocurrió durante 20 años después del informe de Judd et al (1977) sobre la vegetación de la isla South Padre. Las estimaciones de la cobertura total mediante técnicas de validación terrestres y de medición remota fueron similares (2.45% de diferencia) en la isla South Padre. Por lo tanto, la videografía multiesprectral digital aérea se considera una técnica eficaz para evaluar cambios en la cobertura vegetal de las islas barrera de Texas. Esta técnica será una herramienta efectiva para documentar los cambios de cobertura total en las islas barrera debido a las perturbaciones naturales tales como huracanes y disturbios humanos como tráfico vehicular. Las imágenes obtenidas en altitudes de 200 metros o mayores no permitieron la discriminación de las especies dominantes de las varias zonas topográficas de una isla. Sin embargo, la adquisición de imágenes de una época del año en que las especies dominantes están en etapas fenológicas específicas, tales como la floración, y desde una altitud menor, puede facilitar su reconocimiento. Al comparar datos de un transecto transinsular de 1977 con los de tres transectos transinsulares y de 18 transectos correspondientes a la parte frontal, trasera, y de las dunas primarias de la isla en 1977, se sugiere que ha habido una marcada disminución en la riqueza de especies en la parte trasera y en la zona de dunas primarias de la isla South Padre. También hubo un cambio de especies dominantes en la zona trasera. Estos cambios en la riqueza y dominancia de especies pueden ser atribuidos en gran parte al tráfico vehicular en estas zonas

Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes

Coregulator proteins (CoRegs) are part of multi-protein complexes that transiently assemble with transcription factors and chromatin modifiers to regulate gene expression. In this study we analyzed data from 3,290 immuno-precipitations (IP) followed by mass spectrometry (MS) applied to human cell lines aimed at identifying CoRegs complexes. Using the semi-quantitative spectral counts, we scored binary protein-protein and domain-domain associations with several equations. Unlike previous applications, our methods scored prey-prey protein-protein interactions regardless of the baits used. We also predicted domain-domain interactions underlying predicted protein-protein interactions. The quality of predicted protein-protein and domain-domain interactions was evaluated using known binary interactions from the literature, whereas one protein-protein interaction, between STRN and CTTNBP2NL, was validated experimentally; and one domain-domain interaction, between the HEAT domain of PPP2R1A and the Pkinase domain of STK25, was validated using molecular docking simulations. The scoring schemes presented here recovered known, and predicted many new, complexes, protein-protein, and domain-domain interactions. The networks that resulted from the predictions are provided as a web-based interactive application at http://maayanlab.net/HT-IP-MS-2-PPI-DDI/

The effects of luteinizing hormone ablation/replacement versus steroid ablation/replacement on gene expression in the primate corpus luteum

This study was designed to provide a genome-wide analysis of the effects of luteinizing hormone (LH) versus steroid ablation/replacement on gene expression in the developed corpus luteum (CL) in primates during the menstrual cycle. On Days 9–11 of the luteal phase, female rhesus monkeys were left untreated (control) or received a GnRH antagonist Antide (A), A + LH, A + LH + the 3β-hydroxysteroid dehydrogenase inhibitor Trilostane (TRL) or A + LH + TRL + a progestin R5020. On Day 12 of the luteal phase, CL were removed and samples of RNA from individual CL were hybridized to Affymetrix™ rhesus macaque total genome microarrays. The greatest number of altered transcripts was associated with the ablation/replacement of LH, while steroid ablation/progestin replacement affected fewer transcripts. Replacement of LH during Antide treatment restored the expression of most transcripts to control levels. Validation of a subset of transcripts revealed that the expression patterns were similar between microarray and real-time PCR. Analyses of protein levels were subsequently determined for two transcripts. This is the first genome-wide analysis of LH and steroid regulation of gene transcription in the developed primate CL. Further analysis of novel transcripts identified in this data set can clarify the relative role for LH and steroids in CL maintenance and luteolysis