Connecting with undergraduate research: A pilot to tailor data literacy workshops in a library-led summer undergraduate research experience program

Purdue University Libraries, in collaboration with a research unit, recently proposed to establish a summer undergraduate research experiences (URE) program with an emphasis on data literacy that serves students with limited access to research resources, i.e. underrepresented minorities, students from rural area and community colleges, and students with disabilities. The proposed URE professional development activities related to data literacy, specially data management and data ethics, are designed and tailored to this minority serving URE program based on the recommendations synthesized using reflections from librarians who have taught in data literacy workshops in similar URE programs. In recent years, many federal agencies provide funding opportunities to promote UREs in order to attract and retain a diverse pool of talented students and prepare these students for successful careers, and these URE programs usually emphasize the recruitment of students with limited access to research resources. Because of the increasing demand for data literacy in various disciplines, workshops on data science, specifically data management and data ethics, have been incorporated into the professional development activities in URE programs. Our efforts in tailoring data literacy workshops for minority serving URE programs are intended to connect data literacy education with the on-going and increasing needs in undergraduate research, especially with underrepresented groups of students with limited access to research resources

The Regulation of Leptin, Leptin Receptor and Pro-opiomelanocortin Expression by N-3 PUFAs in Diet-Induced Obese Mice Is Not Related to the Methylation of Their Promoters

<p>Abstract</p> <p>Background</p> <p>The expression of leptin is increased in obesity and inhibited by n-3 polyunsaturated fatty acids (n-3 PUFAs), but the underlying molecular mechanisms have not been firmly established.</p> <p>Methods</p> <p>In this study, we investigated the effects of dietary n-3 PUFAs on the methylation of CpG islands in the promoter regions of the leptin, leptin-R and POMC genes, as well as the effects of n-3 PUFA status in early life on the modification of the promoters of these three genes. Male C57 BL/6J mice were fed a high-fat diet with one of four different fat types: sunflower oil (n-3 PUFA deficient), soy oil, fish oil, or a mixture of soy and fish oil (soy:fish oil = 1:1). Two low-fat diets with sunflower oil or soy oil served as controls. Female mice were fed two breeding diets, sunflower oil or a mixture of soy and fish oil (soy:fish oil = 1:1), during pregnancy and lactation to breed new pups.</p> <p>Results</p> <p>Compared to mice fed the control diets, the expression of leptin in fat tissue and leptin-R and POMC in the hypothalamus was higher in the diet-induced obesity (DIO) mice, and the n-3 PUFAs in the diets reversed these elevated expression levels. The mean methylation levels of CpG sites in the promoter regions of the leptin and POMC genes showed no difference between the DIO and the control diet groups nor between the n-3 PUFA-containing and -deficient diet groups. For the CpG sites in the promoter regions of leptin-R, no methylation was found in any of the DIO or control groups. Feeding mice with the n-3 PUFA diet during pregnancy and lactation did not affect CpG methylation in the leptin or POMC promoters.</p> <p>Conclusions</p> <p>Our findings indicate that promoter DNA methylation may not be related to the expression of leptin, leptin-R or its related hypothalamic satiety regulator POMC.</p

Parvalbumin Interneurons Determine Emotional Valence Through Modulating Accumbal Output Pathways

Parvalbumin (PV) expressing GABAergic interneurons provide large source of GABA to spiny projection neurons (SPNs) in the striatum. However, the roles of PV+ interneurons in the regulation of SPNs in the ventral striatum and emotional states are largely unknown. Here, we investigated whether stimulation of ventral striatal (accumbal) PV+ interneurons would drive emotional valence in mice. We found that during conditioned place preference (CPP) training, activation of accumbal PV+ interneurons evoked place preference while suppressing them resulted in conditioned place aversion (CPA). Activation of PV+ interneurons during place conditioning increased Fos expression in SPNs in the direct pathway (dSPNs) and impaired lithium chloride-induced CPA. Activation of dSPNs and SPNs in the indirect pathway (iSPNs) induced CPP and CPA, respectively; conversely, suppression of dSPNs or iSPNs induced CPA or CPP. In addition, activation or suppression of calretinin-expressing (CR) GABAergic interneurons did not induce place preference or aversion. These data suggest that PV+ interneurons can bidirectionally determine the emotional valence through their regulation of accumbal SPN activities and raise the possibility that manipulation of PV+ interneuron activity may have the potential to alter emotional valence and treat related mental disorders

Cultivating regional innovation ecosystems in the digital age: case studies of four cites in China

This paper explores the cultivation paths of innovation ecosystems in the digital age by constructing a theoretical framework consisting of innovators, elements of innovation, platforms and digital governance. Four cities in China, Shenzhen, Hangzhou, Xuzhou and Weifang, were selected for in-depth case studies. Findings revealed that: (1) regions with ‘head enterprises’ and a strong industrial base achieve a competitive advantage via the synergy of digital industrialisation and industrial digitalisation; (2) digital technology pioneer regions can adopt digital industrialisation; (3) regions with a strong industrial base and traditional manufacturing industries can prioritise industrial digitalisation and (4) manufacturing regions with a large number of small and mid-size enterprises (SMEs) who can combine industrial digitalisation and digital value. This study provides theoretical and practical value for the cultivation of regional innovation ecosystems

Mechanistic understanding of \u3ci\u3eN\u3c/i\u3e-glycosylation in Ebola virus glycoprotein maturation and function

The Ebola virus (EBOV) trimeric envelope glycoprotein (GP) precursors are cleaved into the receptor-binding GP1 and the fusion-mediating GP2 subunits and incorporated into virions to initiate infection. GP1 and GP2 form heterodimers that have 15 or two N-glycosylation sites (NGSs), respectively. Here we investigated the mechanism of how N-glycosylation contributes to GP expression, maturation, and function. As reported before, we found that, although GP1 NGSs are not critical, the two GP2 NGSs, Asn563 and Asn618, are essential for GP function. Further analysis uncovered that Asn563 and Asn618 regulate GP processing, demannosylation, oligomerization, and conformation. Consequently, these two NGSs are required for GP incorporation into EBOV-like particles and HIV type 1 (HIV-1) pseudovirions and determine viral transduction efficiency. Using CRISPR/Cas9 technology, we knocked out the two classical endoplasmic reticulum chaperones calnexin (CNX) and/or calreticulin (CRT) and found that bothCNXand CRT increase GP expression. Nevertheless, NGSs are not required for the GP interaction with CNX or CRT. Together, we conclude that, although Asn563 and Asn618 are not required for EBOV GP expression, they synergistically regulate its maturation, which determines its functionality

Challenges and benefits of implementing DIBH for breast cancer radiotherapy: Experiences from Guangzhou Concord Cancer Center

Radiation therapy is used for breast cancer treatments to improve local control and overall survival but may also lead to unwanted complications such as cardiac toxicity and pneumonitis. Deep inspirational breath hold (DIBH) has been used to reduce doses to the heart and other organs near the treatment target to lower the risk of radiation-induced complications. In this study, we present our experience on the clinical implementation and application of DIBH for breast cancer patients, its dosimetric benefits in heart and other organ sparing based on comparisons with free breathing plans, effects on the treatment efficiency as represented by treatment imaging, and beam delivery times, as well as challenges during implementation and clinical application at our center

Improving the stability and efficiency of anaerobic digestion of food waste using additives: a critical review

Anaerobic digestion is an effective technology to treat food waste, with methane production as renewable bioenergy. However, there are two key problems in the practical application, i.e., poor system stability and low reactor efficiency. In this paper, additives used in anaerobic digestion of food waste were systematically reviewed in view of system stability and reactor efficiency. Enzymes showed excellent property in food waste pre-hydrolysis stage with almost all macromolecular matters being rapidly resolved. Fungi fermentation process to produce hydrolytic enzymes, can be regarded as a promising and low-cost way to realize rate-limiting step elimination. It can be also concluded that adding neutralizers, buffer chemicals and some other materials are effective to maintain the pH level for practical application. Trace metals in food waste are not enough but needed for methanogens activation in long term and high loading rate operation. In addition, direct interspecies electron transfer could be much helpful for intermediate refractory organic acids degradation and methanogenesis promotion with additives of conductive materials, which is also discussed and should be studied further in anaerobic digestion of food waste. Based on literature review, a new concept is proposed for further study, suggesting that after being well liquefied with enzyme pre-hydrolysis, food waste could be co-digested with landfill leachate in a high-rate anaerobic reactor stably, resulting in a high bioenergy recovery efficiency. (C) 2018 Elsevier Ltd. All rights reserved

N6-methyladenosine RNA modification promotes viral genomic RNA stability and infection

Molecular manipulation of susceptibility (S) genes that are antipodes to resistance (R) genes has been adopted as an alternative strategy for controlling crop diseases. Here, we show the S gene encoding Triticum aestivum m(6)A methyltransferase B (TaMTB) is identified by a genome-wide association study and subsequently shown to be a positive regulator for wheat yellow mosaic virus (WYMV) infection. TaMTB is localized in the nucleus, is translocated into the cytoplasmic aggregates by binding to WYMV NIb to upregulate the m(6)A level of WYMV RNA1 and stabilize the viral RNA, thus promoting viral infection. A natural mutant allele TaMTB-SNP176C is found to confer an enhanced susceptibility to WYMV infection through genetic variation analysis on 243 wheat varieties. Our discovery highlights this allele can be a useful target for the molecular wheat breeding in the future

Association of Intraoperative Hypotension with Acute Kidney Injury after Noncardiac Surgery in Patients Younger than 60 Years Old

Background/Aims: Intraoperative hypotension (IOH) may be associated with surgery-related acute kidney injury (AKI). However, the duration of hypotension that triggers AKI is poorly understood. The incidence of AKI with various durations of IOH and mean arterial pressures (MAPs) was investigated. Materials: A retrospective cohort study of 4,952 patients undergoing noncardiac surgery (2011 to 2016) with MAP monitoring and a length of stay of one or more days was performed. The exclusion criteria were a preoperative estimated glomerular filtration (eGFR) ≤60 mL min–1 1.73 m2–1, a preoperative MAP less than 65 mm Hg, dialysis dependence, urologic surgery, age older than 60 years, and a surgical duration of less than 60 min. The primary exposure was IOH, and the primary outcome was AKI (50% or 0.3 mg dL–1 increase in creatinine) during the first 7 postoperative days. Multivariable logistic regression was used to model the exposure-outcome relationship. Results: AKI occurred in 186 (3.76%) noncardiac surgery patients. The adjusted odds ratio for surgery-related AKI for a MAP of less than 55 mm Hg was 14.11 (95% confidence interval: 5.02–39.69) for an exposure of more than 20 min. Age was not an interaction factor between AKI and IOH. Conclusion: There was a considerably increased risk of postoperative AKI when intraoperative MAP was less than 55 mm Hg for more than 10 min. Strict blood pressure management is recommended even for patients younger than 60 years old