BarleyBase—an expression profiling database for plant genomics

BarleyBase (BB) (www.barleybase.org) is an online database for plant microarrays with integrated tools for data visualization and statistical analysis. BB houses raw and normalized expression data from the two publicly available Affymetrix genome arrays, Barley1 and Arabidopsis ATH1 with plans to include the new Affymetrix 61K wheat, maize, soybean and rice arrays, as they become available. BB contains a broad set of query and display options at all data levels, ranging from experiments to individual hybridizations to probe sets down to individual probes. Users can perform cross-experiment queries on probe sets based on observed expression profiles and/or based on known biological information. Probe set queries are integrated with visualization and analysis tools such as the R statistical toolbox, data filters and a large variety of plot types. Controlled vocabularies for gene and plant ontologies, as well as interconnecting links to physical or genetic map and other genomic data in PlantGDB, Gramene and GrainGenes, allow users to perform EST alignments and gene function prediction using Barley1 exemplar sequences, thus, enhancing cross-species comparison

TouchEditor: Interaction design and evaluation of a flexible touchpad for text editing of head-mounted displays in speech-unfriendly environments

A text editing solution that adapts to speech-unfriendly (inconvenient to speak or difficult to recognize speech) environments is essential for head-mounted displays (HMDs) to work universally. For existing schemes, e.g., touch bar, virtual keyboard and physical keyboard, there are shortcomings such as insufficient speed, uncomfortable experience or restrictions on user location and posture. To mitigate these restrictions, we propose TouchEditor, a novel text editing system for HMDs based on a flexible piezoresistive film sensor, supporting cursor positioning, text selection, text retyping and editing commands (i.e., Copy, Paste, Delete, etc.). Through literature overview and heuristic study, we design a pressure-controlled menu and a shortcut gesture set for entering editing commands, and propose an area-and-pressure-based method for cursor positioning and text selection that skillfully maps gestures in different areas and with different strengths to cursor movements with different directions and granularities. The evaluation results show that TouchEditor i) adapts to various contents and scenes well with a stable correction speed of 0.075 corrections per second; ii) achieves 95.4% gesture recognition accuracy; iii) reaches a considerable level with a mobile phone in text selection tasks. The comparison results with the speech-dependent EYEditor and the built-in touch bar further prove the flexibility and robustness of TouchEditor in speech-unfriendly environments

Multidifferential study of identified charged hadron distributions in ZZ-tagged jets in proton-proton collisions at s=\sqrt{s}=13 TeV

Jet fragmentation functions are measured for the first time in proton-proton collisions for charged pions, kaons, and protons within jets recoiling against a $Z$ boson. The charged-hadron distributions are studied longitudinally and transversely to the jet direction for jets with transverse momentum 20 $< p_{\textrm{T}} < 100$ GeV and in the pseudorapidity range $2.5 < \eta < 4$. The data sample was collected with the LHCb experiment at a center-of-mass energy of 13 TeV, corresponding to an integrated luminosity of 1.64 fb$^{-1}$. Triple differential distributions as a function of the hadron longitudinal momentum fraction, hadron transverse momentum, and jet transverse momentum are also measured for the first time. This helps constrain transverse-momentum-dependent fragmentation functions. Differences in the shapes and magnitudes of the measured distributions for the different hadron species provide insights into the hadronization process for jets predominantly initiated by light quarks.Comment: All figures and tables, along with machine-readable versions and any supplementary material and additional information, are available at https://cern.ch/lhcbproject/Publications/p/LHCb-PAPER-2022-013.html (LHCb public pages

Study of the B−→Λc+Λˉc−K−B^{-} \to \Lambda_{c}^{+} \bar{\Lambda}_{c}^{-} K^{-} decay

The decay $B^{-} \to \Lambda_{c}^{+} \bar{\Lambda}_{c}^{-} K^{-}$ is studied in proton-proton collisions at a center-of-mass energy of $\sqrt{s}=13$ TeV using data corresponding to an integrated luminosity of 5 $\mathrm{fb}^{-1}$ collected by the LHCb experiment. In the $\Lambda_{c}^+ K^{-}$ system, the $\Xi_{c}(2930)^{0}$ state observed at the BaBar and Belle experiments is resolved into two narrower states, $\Xi_{c}(2923)^{0}$ and $\Xi_{c}(2939)^{0}$, whose masses and widths are measured to be $$m(\Xi_{c}(2923)^{0}) = 2924.5 \pm 0.4 \pm 1.1 \,\mathrm{MeV}, \\ m(\Xi_{c}(2939)^{0}) = 2938.5 \pm 0.9 \pm 2.3 \,\mathrm{MeV}, \\ \Gamma(\Xi_{c}(2923)^{0}) = \phantom{000}4.8 \pm 0.9 \pm 1.5 \,\mathrm{MeV},\\ \Gamma(\Xi_{c}(2939)^{0}) = \phantom{00}11.0 \pm 1.9 \pm 7.5 \,\mathrm{MeV},$$ where the first uncertainties are statistical and the second systematic. The results are consistent with a previous LHCb measurement using a prompt $\Lambda_{c}^{+} K^{-}$ sample. Evidence of a new $\Xi_{c}(2880)^{0}$ state is found with a local significance of $3.8\,\sigma$, whose mass and width are measured to be $2881.8 \pm 3.1 \pm 8.5\,\mathrm{MeV}$ and $12.4 \pm 5.3 \pm 5.8 \,\mathrm{MeV}$, respectively. In addition, evidence of a new decay mode $\Xi_{c}(2790)^{0} \to \Lambda_{c}^{+} K^{-}$ is found with a significance of $3.7\,\sigma$. The relative branching fraction of $B^{-} \to \Lambda_{c}^{+} \bar{\Lambda}_{c}^{-} K^{-}$ with respect to the $B^{-} \to D^{+} D^{-} K^{-}$ decay is measured to be $2.36 \pm 0.11 \pm 0.22 \pm 0.25$, where the first uncertainty is statistical, the second systematic and the third originates from the branching fractions of charm hadron decays.Comment: All figures and tables, along with any supplementary material and additional information, are available at https://cern.ch/lhcbproject/Publications/p/LHCb-PAPER-2022-028.html (LHCb public pages

Deep Learning-Based Security Verification for a Random Number Generator Using White Chaos

In this paper, a deep learning (DL)-based predictive analysis is proposed to analyze the security of a non-deterministic random number generator (NRNG) using white chaos. In particular, the temporal pattern attention (TPA)-based DL model is employed to learn and analyze the data from both stages of the NRNG: the output data of a chaotic external-cavity semiconductor laser (ECL) and the final output data of the NRNG. For the ECL stage, the results show that the model successfully detects inherent correlations caused by the time-delay signature. After optical heterodyning of two chaotic ECLs and minimal post-processing are introduced, the model detects no patterns among corresponding data. It demonstrates that the NRNG has the strong resistance against the predictive model. Prior to these works, the powerful predictive capability of the model is investigated and demonstrated by applying it to a random number generator (RNG) using linear congruential algorithm. Our research shows that the DL-based predictive model is expected to provide an efficient supplement for evaluating the security and quality of RNGs

BarleyBase—an expression profiling database for plant genomics

BarleyBase (BB) ( www.barleybase.org ) is an online database for plant microarrays with integrated tools for data visualization and statistical analysis. BB houses raw and normalized expression data from the two publicly available Affymetrix genome arrays, Barley1 and Arabidopsis ATH1 with plans to include the new Affymetrix 61K wheat, maize, soybean and rice arrays, as they become available. BB contains a broad set of query and display options at all data levels, ranging from experiments to individual hybridizations to probe sets down to individual probes. Users can perform cross-experiment queries on probe sets based on observed expression profiles and/or based on known biological information. Probe set queries are integrated with visualization and analysis tools such as the R statistical toolbox, data filters and a large variety of plot types. Controlled vocabularies for gene and plant ontologies, as well as interconnecting links to physical or genetic map and other genomic data in PlantGDB, Gramene and GrainGenes, allow users to perform EST alignments and gene function prediction using Barley1 exemplar sequences, thus, enhancing cross-species comparison.This article is published as Shen, Lishuang, Jian Gong, Rico A. Caldo, Dan Nettleton, Dianne Cook, Roger P. Wise, and Julie A. Dickerson. "BarleyBase—an expression profiling database for plant genomics." Nucleic Acids Research 33, no. suppl_1 (2005): D614-D618. doi: 10.1093/nar/gki123. </p

Research Data supporting "Bright and stable perovskite light-emitting diodes in the near-infrared range"

The data sets stored here accompany the related research article, showing the data supporting the figures of the publication. Fig. 1 contains the data of perovskite light-emitting diodes. Fig. 2 includes the data supporting characteristics of perovskite films and molecular interactions. The data of Fig. 3 is charge-carrier kinetics of perovskite films. Fig. 4 contains time-resolved photoluminescence decay kinetics of perovskites with charge-transport layers.European Research Council (756962) Royal Society (RGF/EA/180085) European Commission Horizon 2020 (H2020) ERC (957513