The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide

The Genomes On Line Database (GOLD) is a web resource for comprehensive access to information regarding complete and ongoing genome sequencing projects worldwide. The database currently incorporates information on over 1500 sequencing projects, of which 294 have been completed and the data deposited in the public databases. GOLD v.2 has been expanded to provide information related to organism properties such as phenotype, ecotype and disease. Furthermore, project relevance and availability information is now included. GOLD is available at . It is also mirrored at the Institute of Molecular Biology and Biotechnology, Crete, Greece a

Atomic effects in astrophysical nuclear reactions

Two models are presented for the description of the electron screening effects that appear in laboratory nuclear reactions at astrophysical energies. The two-electron screening energy of the first model agrees very well with the recent LUNA experimental result for the break-up reaction $He3(He3,2p)He^{4}$, which so far defies all available theoretical models. Moreover, multi-electron effects that enhance laboratory reactions of the CNO cycle and other advanced nuclear burning stages, are also studied by means of the Thomas-Fermi model, deriving analytical formulae that establish a lower and upper limit for the associated screening energy. The results of the second model, which show a very satisfactory compatibility with the adiabatic approximation ones, are expected to be particularly useful in future experiments for a more accurate determination of the CNO astrophysical factors.Comment: 14 RevTex pages + 2 ps (revised) figures. Phys.Rev.C (in production

Screened alpha decay in dense astrophysical plasmas and magnetars

This paper shows that ultrastrong magnetic fields (such as those of magnetars) and dense astrophysical plasmas can reduce the half life of alpha decaying nuclei by many orders of magnitude. In such environments the conventional Geiger-Nuttall law is modifed so that all half lives are shifted to dramatically lower values. Those effects, which have never been investigated before, may have significant implications on the universal abundances of heavy radioactive elements and the cosmochronological methods that rely on them.Comment: 15 RevTex pages, 3 ps figures (minor revision). This work was presented during the conference ''Supernova, 10 years of SN1993J'', April 2003, Valencia, Spain. Accepted for publication in Phys.Rev.

Astrophysical factors:Zero energy vs. Most effective energy

Effective astrophysical factors for non-resonant astrophysical nuclear reaction are invariably calculated with respect to a zero energy limit. In the present work that limit is shown to be very disadvantageous compared to the more natural effective energy limit. The latter is used in order to modify the thermonuclear reaction rate formula so that it takes into account both plasma and laboratory screening effects.Comment: 7 RevTex pages. Accepted for publication in Phys.Rev.

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

The Genomes On Line Database (GOLD) is a comprehensive resource that provides information on genome and metagenome projects worldwide. Complete and ongoing projects and their associated metadata can be accessed in GOLD through pre-computed lists and a search page. As of September 2007, GOLD contains information on more than 2900 sequencing projects, out of which 639 have been completed and their sequence data deposited in the public databases. GOLD continues to expand with the goal of providing metadata information related to the projects and the organisms/environments towards the Minimum Information about a Genome Sequence’ (MIGS) guideline. GOLD is available at http://www.genomesonline.org and has a mirror site at the Institute of Molecular Biology and Biotechnology, Crete, Greece at http://gold.imbb.forth.gr

DRAGONS-A Micrometeoroid and Orbital Debris Impact Sensor on the ISS

The Debris Resistive/Acoustic Grid Orbital Navy-NASA Sensor (DRAGONS) is intended to be a large area impact sensor for in situ measurements of micrometeoroids and orbital debris (MMOD) in the sub-millimeter to millimeter size regime in the near Earth space environment. These MMOD particles are too small to be detected by ground-based radars and optical telescopes, but still large enough to be a serious threat to human space activities and robotic missions in the low Earth orbit (LEO) region. The nominal detection area of DRAGONS is 1 sq m, consisting of four 0.5 m 0.5 m independent panels, but the dimensions of the panels can easily be modified to accommodate different payload constraints. The approach of the DRAGONS design is to combine three particle impact detection concepts to maximize information that can be extracted from each detected impact. The first is a resistive grid consisting of 75-micrometer-wide resistive lines, coated in parallel and separated by 75 micrometer gaps on a 25-micrometer thin film. When a particle a few hundred micrometers or larger strikes the grid, it would penetrate the film and sever some resistive lines. The size of the damage area can be estimated from the increased resistance. The second concept is based on polyvinylidene fluoride (PVDF) acoustic impact sensors. Multiple PVDF sensors are attached to the thin film to provide the impact timing information. From the different signal arrival times at different acoustic sensors, the impact location can be calculated via triangulation algorithms. The third concept employs a dual-layer film system where a second 25-micrometer film is placed 15 cm behind the resistive-grid film. Multiple PVDF acoustic sensors are also attached to the second film. The combination of impact timing and location information from the two films allows for direct measurements of the impact direction and speed. The DRAGONS technology development has been funded by several NASA organizations since 2002, first by the NASA Science Mission Directorate and the NASA Exploration Systems Mission Directorate, then by the NASA JSC Innovative Research and Development Program and the NASA Orbital Debris Program Office. The NASA Orbital Debris Program Office leads the effort with collaboration from the U.S. Naval Academy, Naval Research Laboratory, University of Kent at Canterbury in Great Britain, and Virginia Tech. The project recently reached a major milestone when DRAGONS was approved for a technology demonstration mission by the International Space Station (ISS) Program in October 2014. The plan is to deploy a 1 sq m DRAGONS on the ISS with the detection surface facing the ram-direction for 2 to 3 years. The tentative launch schedule is in early 2017. This mission will collect data on orbital debris in the sub-millimeter size regime to better define the small orbital debris environment at the ISS altitude. The mission will also advance the DRAGONS Technology Readiness Level to 9 and greatly enhance the opportunities to deploy DRAGONS on other spacecraft to high LEO orbits in the future

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

The Genomes On Line Database (GOLD) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2009, GOLD contains information for more than 5800 sequencing projects, of which 1100 have been completed and their sequence data deposited in a public repository. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about a (Meta)Genome Sequence (MIGS/MIMS) specification. GOLD is available at: http://www.genomesonline.org and has a mirror site at the Institute of Molecular Biology and Biotechnology, Crete, Greece, at: http://gold.imbb.forth.gr

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11 472 sequencing projects, of which 2907 have been completed and their sequence data has been deposited in a public repository. Out of these complete projects, 1918 are finished and 989 are permanent drafts. Moreover, GOLD contains information for 340 metagenome studies associated with 1927 metagenome samples. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about any (x) Sequence specification and beyond

Screening enhancement factors for laboratory CNO and rp astrophysical reactions

Cross sections of laboratory CNO and rp astrophysical reactions are enhanced due to the presence of the multi-electron cloud that surrounds the target nuclei. As a result the relevant astrophysical factors are overestimated unless corrected appropriately. This study gives both an estimate of the error committed if screening effects are not taken into account and a rough profile of the laboratory energy thresholds at which the screening effect appears. The results indicate that, for most practical purposes, screening corrections to past relevant experiments can be disregarded. Regarding future experiments, however, screening corrections to the CNO reactions will certainly be of importance as they are closely related to the solar neutrino fluxes and the rp process. Moreover, according to the present results, screening effects will have to be taken into account particularly by the current and future LUNA experiments, where screened astrophysical factors will be enhanced to a significant degree.Comment: 6 RevTex pages + 2 ps figures. (Revised version). Accepted for publication in Journal of Physics