Cropping System Diversification Reduces Severity and Incidence of Soybean Sudden Death Syndrome Caused by Fusarium virguliforme

Current management of sudden death syndrome (SDS) of soybean, caused by Fusarium virguliforme, focuses on planting resistant varieties and improving soil drainage; however, these measures are not completely effective. A 6-year study evaluated the effects of cropping system diversification on SDS and soybean yield. SDS, root health, yield, and F. virguliforme density in soil were assessed in a naturally infested field trial comparing a 2-year cropping system consisting of a corn-soybean rotation and synthetic fertilizer applications with 3- and 4-year cropping systems consisting of corn-soybean-oat + red clover and corn-soybean-oat +alfalfa-alfalfa rotations, respectively, with both manure and low synthetic fertilizer rates. In 5 of 6 years, SDS incidence and severity were lower and yield higher in the 3- and 4-year systems than in the 2-year system. SDS severity and incidence were up to 17-fold lower in the diversified systems than in the 2-year system. Incidence and severity of SDS explained 45 to 87% of the variation in yield. Plants in the 2-year system generally showed more severe root rot and lower plant weights than plants in the diversified systems. F. virguliforme density in soil was up to fivefold greater in the 2-year system compared with the 4-year system. The processes responsible for the suppression of SDS and yield protection in the diversified cropping systems still need to be determined

Characterization of adjacent breast tumors using oligonucleotide microarrays

BACKGROUND: Current methodology often cannot distinguish second primary breast cancers from multifocal disease, a potentially important distinction for clinical management. In the present study we evaluated the use of oligonucleotide-based microarray analysis in determining the clonality of tumors by comparing gene expression profiles. METHOD: Total RNA was extracted from two tumors with no apparent physical connection that were located in the right breast of an 87-year-old woman diagnosed with invasive ductal carcinoma (IDC). The RNA was hybridized to the Affymetrix Human Genome U95A Gene Chip(®) (12,500 known human genes) and analyzed using the Gene Chip Analysis Suite(®) 3.3 (Affymetrix, Inc, Santa Clara, CA, USA) and JMPIN(®) 3.2.6 (SAS Institute, Inc, Cary, NC, USA). Gene expression profiles of tumors from five additional patients were compared in order to evaluate the heterogeneity in gene expression between tumors with similar clinical characteristics. RESULTS: The adjacent breast tumors had a pairwise correlation coefficient of 0.987, and were essentially indistinguishable by microarray analysis. Analysis of gene expression profiles from different individuals, however, generated a pairwise correlation coefficient of 0.710. CONCLUSION: Transcriptional profiling may be a useful diagnostic tool for determining tumor clonality and heterogeneity, and may ultimately impact on therapeutic decision making

The Effect of Natural Mulches on Crop Performance, Weed Suppression and Biochemical Constituents of Catnip and St. John\u27s Wort

Because of expanding markets for high-value niche crops, opportunities have increased for the production of medicinal herbs in the USA. An experiment was conducted in 2001 and 2002 near Gilbert, IA, to study crop performance, weed suppression, and environmental conditions associated with the use of several organic mulches in the production of two herbs, catnip (Nepeta cataria L.) and St. John\u27s wort (Hypericum perforatum L. ‘Helos’). Treatments were arranged in a completely randomized design and included a positive (hand-weeded) control, a negative (nonweeded) control, oat straw, a flax straw mat, and a nonwoven wool mat. Catnip plant height was significantly greater in the oat straw than the other treatments at 4 wk through 6 wk in 2001; at 4 to 8 wk in 2002, catnip plant height and width was significantly lower in the negative control compared with the other treatments. Catnip yield was significantly higher in the flax straw mat than all other treatments in 2001. In 2002, St. John\u27s wort yields were not statistically different in any treatments. All weed management treatments had significantly fewer weeds than the non-weeded rows in 2002. Total weed density comparisons in each crop from 2 yr showed fewer weeds present in the flax straw and wool mat treatments compared with positive control plots. There was no significant weed management treatment effect on the concentration of the target compounds, nepetalactone in catnip and pseudohypericin–hypericin in St. John\u27s wort, although there was a trend toward higher concentrations in the flax straw treatment

Integrating Organic Soybean Production following Conservation Reserve Program (CRP) Land into Sustainable Farming Systems

Organic farming has increased to an $8 billion industry in the United States and continues to expand approximately 20% annually. In Iowa alone, organic acreage has increased from 13,000 acres in 1995 to 150,000 in 1999. Across the North Central region, there has been great interest in planting organic soybeans on Conservation Reserve Program (CRP) land, where up to a 400% premium can be obtained compared with conventionally raised soybeans. Regulation of soil organic matter through additions of plant residues and proper crop rotations will determine the long-term sustainability of the system

Maize and soybean root front velocity and maximum depth in Iowa, USA

Quantitative measurements of root traits can improve our understanding of how crops respond to soil and weather conditions, but such data are rare. Our objective was to quantify maximum root depth and root front velocity (RFV) for maize (Zea mays) and soybean (Glycine max) crops across a range of growing conditions in the Midwest USA. Two sets of root measurements were taken every 10–15 days: in the crop row (in-row) and between two crop rows (center-row) across six Iowa sites having different management practices such as planting dates and drainage systems, totaling 20 replicated experimental treatments. Temporal root data were best described by linear segmental functions. Maize RFV was 0.62 ± 0.2 cm d−1 until the 5th leaf stage when it increased to 3.12 ± 0.03 cm d−1 until maximum depth occurred at the 18th leaf stage (860 °Cd after planting). Similar to maize, soybean RFV was 1.19 ± 0.4 cm d−1 until the 3rd node when it increased to 3.31 ± 0.5 cm d−1 until maximum root depth occurred at the 13th node (813.6 °C d after planting). The maximum root depth was similar between crops (P \u3e 0.05) and ranged from 120 to 157 cm across 18 experimental treatments, and 89–90 cm in two experimental treatments. Root depth did not exceed the average water table (two weeks prior to start grain filling) and there was a significant relationship between maximum root depth and water table depth (R2 = 0.61; P = 0.001). Current models of root dynamics rely on temperature as the main control on root growth; our results provide strong support for this relationship (R2 \u3e 0.76; P \u3c 0.001), but suggest that water table depth should also be considered, particularly in conditions such as the Midwest USA where excess water routinely limits crop production. These results can assist crop model calibration and improvements as well as agronomic assessments and plant breeding efforts in this region

Increased microparticle tissue factor activity in cancer patients with Venous Thromboembolism

AbstractCancer patients exhibit a high rate of thromboembolism (VTE). In this study, we analyzed levels of microparticle (MP) tissue factor (TF) activity in cancer patients with or without VTE. Blood was collected from cancer patients within 24 h of objectively diagnosed VTE (n=53) and from cancer patients without VTE (n=13). MPs were isolated from platelet poor plasma by centrifugation at 20,000g for 15 min. MP TF activity was measured using a two-stage chromogenic assay. Cancer patients with VTE had a significantly higher mean MP TF activity compared with cancer patients without VTE (1.7±3.8 pg/mL vs 0.6±0.4 pg/mL,

pH and rate of ‘dark’ events in toad retinal rods : test of a hypothesis on the molecular origin of photoreceptor noise

Thermal activation of the visual pigment constitutes a fundamental constraint on visual sensitivity. Its electrical correlate in the membrane current of dark-adapted rods are randomly occurring discrete ‘dark events’ indistinguishable from responses to single photons. It has been proposed that thermal activation occurs in a small subpopulation of rhodopsin molecules where the Schiff base linking the chromophore to the protein part is unprotonated. On this hypothesis, rates of thermal activation should increase strongly with rising pH. The hypothesis has been tested by measuring the effect of pH changes on the frequency of discrete dark events in red rods of the common toad Bufo bufo. Dark noise was recorded from isolated rods using the suction pipette technique. Changes in cytoplasmic pH upon manipulations of extracellular pH were quantified by measuring, using fast single-cell microspectrophotometry, the pH-dependent metarhodopsin I–metarhodopsin II equilibrium and subsequent metarhodopsin III formation. These measurements show that, in the conditions of the electrophysiological experiments, changing perfusion pH from 6.5 to 9.3 resulted in a cytoplasmic pH shift from 7.6 to 8.5 that was readily sensed by the rhodopsin. This shift, which implies an 8-fold decrease in cytoplasmic [H+], did not increase the rate of dark events. The results contradict the hypothesis that thermal pigment activation depends on prior deprotonation of the Schiff base

Final optics damage inspection (FODI) for the National Ignition Facility

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory (LLNL) will routinely fire high energy shots (approaching 10 kJ per beamline) through the final optics, located on the target chamber. After a high fluence shot, exceeding 4J/cm2 at 351 nm wavelength, the final optics will be inspected for laser-induced damage. The FODI (Final Optics Damage Inspection) system has been developed for this purpose, with requirements to detect laser-induced damage initiation and to track and size it's the growth to the point at which the optic is removed and the site mitigated. The FODI system is the 'corner stone' of the NIF optic recycle strategy. We will describe the FODI system and discuss the challenges to make optics inspection a routine part of NIF operations