Identifying Functional Mechanisms of Gene and Protein Regulatory Networks in Response to a Broader Range of Environmental Stresses

Cellular responses to sudden environmental stresses or physiological changes provide living organisms with the opportunity for final survival and further development. Therefore, it is an important topic to understand protective mechanisms against environmental stresses from the viewpoint of gene and protein networks. We propose two coupled nonlinear stochastic dynamic models to reconstruct stress-activated gene and protein regulatory networks via microarray data in response to environmental stresses. According to the reconstructed gene/protein networks, some possible mutual interactions, feedforward and feedback loops are found for accelerating response and filtering noises in these signaling pathways. A bow-tie core network is also identified to coordinate mutual interactions and feedforward loops, feedback inhibitions, feedback activations, and cross talks to cope efficiently with a broader range of environmental stresses with limited proteins and pathways

A new species of Archaeoryctes from the Middle Paleocene of China and the phylogenetic diversification of Didymoconidae

Didymoconidae are an enigmatic group of Asian endemic insectivorous mammals. We describe the new didymoconid species Archaeoryctes wangi sp. nov. from the Upper Member of the Wanghudun Formation (Middle Paleocene). This new species from the Qianshan Basin (Anhui Province, China) forms an interesting geographical intermediate between A. notialis from South China and A. borealis and A. euryalis from the Mongolian Plateau. To better understand the origin and evolutionary diversification of Didymoconidae, we performed a cladistic and stratocladistic study of the Didymoconidae and various outgroups. This study of dental material did not resolve the higher level affinities of Didymoconidae, but confirms the validity of the family and its distinctiveness from the morphologically similar Sarcodontidae. Moreover, our results corroborate the current didymoconid classification with the distinction of three subfamilies: “Ardynictinae”, Kennatheriinae and Didymoconinae; “Ardynictinae” are a paraphyletic stemgroup for the two other subfamilies. Our results suggest three distinct didymoconid radiations: (1) primitive ardynictines appeared in South China from the start of the Nongshanian; their evolution continues on the Mongolian Plateau with (2) the radiation of more evolved ardynictines and kennatheriines at the start of the Middle Eocene Arshantan and (3) the origin of didymoconines at the start of the Late Eocene Ergilian

New plants from the Lower Devonian Pingyipu Group, Jiangyou County, Sichuan Province, China

Descriptions of Lower Devonian plants from Yunnan, South China, have revolutionized concepts of diversity and disparity in tracheophytes soon after they became established on land. Sichuan assemblages have received little attention since their discovery almost 25 years ago and require revision. With this objective, fieldwork involving detailed logging and collection of fossils was undertaken in the Longmenshan Mountain Region, Jiangyou County and yielded the two new taxa described here. They are preserved as coalified compressions and impressions that allowed morphological but not anatomical analyses. Yanmenia (Zosterophyllum) longa comb nov is based on numerous rarely branching shoots with enations resembling lycophyte microphylls, without evidence for vasculature. The presence of sporangia is equivocal making assignation to the Lycopsida conjectural. The plant was recently described as a zosterophyll, but lacks strobili. These are present in the second plant and comprise bivalved sporangia. The strobili terminate aerial stems which arise from a basal axial complex displaying diversity in branching including H- and K- forms. These features characterise the Zosterophyllopsida, although the plant differs from Zosterophyllum in valve shape. Comparisons indicate greatest similarities to the Lower Devonian Guangnania cuneata, from Yunnan, but differences, particularly in the nature of the sporangium border, require the erection of a new species, G. minor. Superficial examination of specimens already published indicate a high degree of endemism at both species and generic level, while this study shows that Yanmenia is confined to Sichuan and Guangnania is one of the very few genera shared with Yunnan, where assemblages also show a high proportion of further endemic genera. Such provincialism noted in the Chinese Lower Devonian is explained by the palaeogeographic isolation of the South China plate, but this cannot account for differences/endemism between the Sichuan and Yunnan floras. Such an enigma demands further integrated geological, palaeobotanical and palynological studies

Kinematical coherence between satellite galaxies and host stellar discs for MaNGA & SAMI galaxies

The effect of angular momentum on galaxy formation and evolution has been studied for several decades. Our recent two papers using IllustrisTNG-100 simulation have revealed the acquisition path of the angular momentum from large-scale environment (satellites within hundreds of kpc) through the circum-galactic medium (CGM) to the stellar discs, putting forward the co-rotation scenario across the three distance scales. In real observations, although the rotation signature for the CGM and environmental three-dimensional (3d) angular momentum are difficult to obtain, line-of-sight kinematics of group member galaxies and stellar disc kinematics of central galaxies are available utilizing existing group catalogue data and integral field unit (IFU) data. In this paper, we use (1) the group catalogue of SDSS DR7 and MaNGA IFU stellar kinematic maps and (2) the group catalogue of GAMA DR4 data and SAMI IFU stellar kinematic maps, to test if the prediction above can be seen in real data. We found the co-rotation pattern between stellar discs and satellites can be concluded with 99.7 percent confidence level ($\sim 3\sigma$) when combining the two datasets. And the random tests show that the signal can be scarcely drawn from random distribution.Comment: 8 pages, 8 figures, accepted for publication in MNRA

Kinematical coherence between satellite galaxies and host stellar discs for MaNGA and SAMI galaxies

The effect of angular momentum on galaxy formation and evolution has been studied for several decades. Our recent two papers using IllustrisTNG-100 simulation have revealed the acquisition path of the angular momentum from large-scale environment (satellites within hundreds of kpc) through the circumgalactic medium (CGM) to the stellar discs, putting forward the co-rotation scenario across the three distance scales. In real observations, although the rotation signature for the CGM and environmental three-dimensional angular momentum are difficult to obtain, line-of-sight kinematics of group member galaxies and stellar disc kinematics of central galaxies are available utilizing existing group catalogue data and integral field unit (IFU) data. In this paper, we use (1) the group catalogue of SDSS DR7 and MaNGA IFU stellar kinematic maps and (2) the group catalogue of GAMA DR4 data and SAMI IFU stellar kinematic maps, to test if the prediction above can be seen in real data. We found the co-rotation pattern between stellar discs and satellites can be concluded with 99.7 per cent confidence level (∼3σ) when combining the two data sets. And the random tests show that the signal can be scarcely drawn from random distribution