Katz trees for dryad

Gene trees generated from alignments that are also uploade

Euk_1554

Alignment file; 1554 genes; eukaryote

1554_Single_gene_alignments_Euk_only

All 1554 single gene alignments with only eukaryotic taxa. Data were concatenated and columns with > 50% missing data were removed to make the large matrices analyzed in this study

Table_S1

Table_S1.xlsx: Taxon source and code Taxa are listed by major clade, and information is given about the source of the data (e.g. OrthoMCL, Genbank, Moore Transcriptome Project). Codes used throughout the study are given. Taxa in red are in Phylobayes analysis but removed from other analyse

1554_Single_gene_alignments_All

All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missing data in eukaryotic taxa were removed to make the large matrices analyzed in this study

Table_S1

Table_S1.xlsx: Taxon source and code Taxa are listed by major clade, and information is given about the source of the data (e.g. OrthoMCL, Genbank, Moore Transcriptome Project). Codes used throughout the study are given. Taxa in red are in Phylobayes analysis but removed from other analyse

All_150

Alignment file; 150 genes; eukaryotes, bacteria and archae

All_1554

Alignment file; 1554 genes; eukaryotes, bacteria and archaea

Euk_1554_noEGT

Alignment file; 1554 genes minus egt genes; eukaryote

Table_S2

Table_S2.xlsx: Presence/Absence of genes x taxa Genes present by taxon. 1 = present; 0 = absent. Genes are given by OG name (OrthoMCL) and are marked with an * if a member of the 150 most even gene dataset and with a ^ if identified as a gene affected by EG