Count Tables in R

R script for counting differentially expressed and up- or down-regulated contigs for a given category. Useful for interpreting expression changes for multiple unique contigs within a category (i.e. multiple proteins of an ion channel). Written by Lara McGrath. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Annotations for Homarus americanus transcriptome

Protein annotations from tBlast of de novo assembled Homarus americanus transcriptome against NCBI, and UniprotKB Swiss-Prot and TrEMBL databases. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Read Counts for Homarus americanus transcriptome samples

Read counts from read mapping conducted in Bowtie (version 0.12.7) against de novo assembled Homarus americanus transcriptome. For identification of samples: U= untreated, P=proctolin-treated, M=muscle, B= brain, H= heart, A= abdominal ganglia, and number indicates individual lobster. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.co

Transcriptome assembly for American lobster Homarus americanus

Transcriptome assembly for the American lobster, Homarus americanus. Assembly conducted in Trinity (version 8-14-2013) from 145 million single-end reads (Illumina HiSeq 2000) from mRNA extracted from nervous system, heart, and muscle tissues of Homarus americanus (2012). For additional information, please email Lara McGrath at lara.l.mcgrath [at] gmail.co