Bioremediation of petroleum-contaminated soils: mathematical modelling as a tool for the simulation of alternative strategies

POCI-01-0145-FEDER-016575; ERC Grant n.º 323009; UID/BIO/04469/2013; POCI -01-0145-FEDER-006684; NORTE-01-0145-FEDER-000004; FCOMP-01-0124- FEDER-027462; SFRH/BPD/80528/2011info:eu-repo/semantics/publishedVersio

Novel anaerobe obtained from a hexadecane-degrading consortium

Background: Aliphatic hydrocarbons (AHC) are abundant in crude oil and fuels, and are frequent contaminants of water, soil and sediments. There is potential for AHC bioremediation using sulfate as electron acceptor, due to its abundance in marine environments and natural presence in soils and groundwater. Objectives: In this work sulfate-reducing anaerobic microorganisms involved in AHC biodegradation were studied. Methods: Anaerobic sludge was incubated at 37ºC with hexadecane (1mM) and sulfate (20mM) in serum vials. Cultures were successively transferred to fresh medium until a stable enrichment was obtained (monitored by microscopy and PCR-DGGE of 16S rRNA gene). For isolation of AHC-degrading bacteria, serial dilutions and successive transfers are now running using palmitate (1mM) as an easier substrate. Conclusions: Cultures growing on palmitate show two main bacterial cell types: a rod-shaped bacterium closely related to Desulfomonile limimaris (94% identity) was predominant in the first 30 days of incubation, when 83% of the added palmitate was degraded coupled to 4 mM sulfate reduction (suggesting stoichiometric palmitate conversion to acetate); and an oval-shaped bacterium related to Desulforhabdus amnigena (99% identity) that mainly developed when incubations where extended and a total of 11.5 mM sulfate was reduced. Growth of Desulforhabdus was stimulated when incubated with acetate. The role of the Desulfomonile in AHC degradation will be further discussed in the presentation, as well as its halorespiring ability, a characteristic of the Desulfomonile genera. Further characterization of this novel bacterium is important due to its high potential for bioremediation of hydrocarbons, fats and halogenated pollutants

Facts and challenges on hydrocarbons bioremediation

Book of Abstracts of CEB Annual Meeting 2017[Excerpt] The intense activity of the oil industry generates substantial amounts of contaminated wastes and wastewaters. Moreover, accidental oil spills occur frequently, causing severe damages in the marine environment and in the soil. Subsurface soil contamination is generally caused by oil leakages from underground storage tanks and transport pipelines that can further lead to groundwater contamination. To date, common techniques for remediation of petroleum-contaminated environments include physical removal, washing by cosolvents or surfactants, thermal desorption, electrokinetic movement of contaminants and oxidation/reduction via chemical agents. Biological technologies can be an alternative to the more aggressive physicochemical methods, as bioremediation exploits the metabolic diversity of microorganisms and their ability to degrade organic contaminants. Aerobic bioremediation is frequently preferred over anaerobic processes, due to faster rates of hydrocarbons activation and biodegradation [1]. However, in subsurface environments oxygen is generally scarce and anoxic conditions prevail. Anaerobic microorganisms can biodegrade hydrocarbons coupled to the reduction of nitrate, iron(III), sulfate or under methanogenic conditions [2]. In situ bioremediation of hydrocarbons at anoxic conditions has not been extensively studied, despite the broad occurrence of these contaminants in the subsurface. Reduced knowledge on the catabolic mechanisms and microbial communities involved in anaerobic hydrocarbons biodegradation has limited this approach, and needs further research. [...]info:eu-repo/semantics/publishedVersio

Who is who in anaerobic oil biodegradation?

[Excerpt] Anaerobic bioremediation is an important alternative for the common aerobic cleanup of subsurface petroleum-contaminated soil and water. Microbial communities involved in anaerobic oil biodegradation are scarcely studied, and only few mechanisms of anaerobic hydrocarbons degradation are described. In this work, microbial degradation of aliphatic hydrocarbons (AHC) was studied by using culture-dependent and culture-independent approaches. Hexadecane and hexadecene-degrading microbial communities were enriched under sulfate-reducing and methanogenic conditions. The microorganisms present in the enriched cultures were identified by 16S rRNA gene sequencing. (...

Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601T

The genomes of the Betaproteobacteria Alicycliphilus denitrificans strains BC and K601T have been sequenced to get insight into the physiology of the two strains. Strain BC degrades benzene with chlorate as electron acceptor. The cyclohexanol-degrading denitrifying strain K601T is not able to use chlorate as electron acceptor, while strain BC cannot degrade cyclohexanol. The 16S rRNA sequences of strains BC and K601T are identical and the fatty acid methyl ester patterns of the strains are similar. Basic Local Alignment Search Tool (BLAST) analysis of predicted open reading frames of both strains showed most hits with Acidovorax sp. JS42, a bacterium that degrades nitro-aromatics. The genomes include strain-specific plasmids (pAlide201 in strain K601T and pAlide01 and pAlide02 in strain BC). Key genes of chlorate reduction in strain BC were located on a 120 kb megaplasmid (pAlide01), which was absent in strain K601T. Genes involved in cyclohexanol degradation were only found in strain K601T. Benzene and toluene are degraded via oxygenase-mediated pathways in both strains. Genes involved in the meta-cleavage pathway of catechol are present in the genomes of both strains. Strain BC also contains all genes of the ortho-cleavage pathway. The large number of mono- and dioxygenase genes in the genomes suggests that the two strains have a broader substrate range than known thus far.This research was supported by the Technology Foundation, the Applied Science Division (STW) of the Netherlands Organization for Scientific Research (NWO), project number 08053, the graduate school WIMEK (Wageningen Institute for Environment and Climate Research, which is part of SENSE Research School for Socio-Economic and Natural Sciences of the Environment, www.wimek-new.wur.nl and www.sense.nl), SKB (Dutch Centre for Soil Quality Management and Knowledge Transfer, www.skbodem.nl) and the Consolider project CSD-2007-00055. The research was incorporated in the TRIAS (TRIpartite Approaches 469 toward Soil systems processes) program (http://www.nwo.nl/en/research-and-results/programmes/alw/trias-tripartite-approach-to-soil-system-processes/index. html). Flávia Talarico Saia was supported by a FAPESP (the State of São Paulo Research Foundation) scholarship (2006-01997/5). The work conducted by the DOE JGI is supported by the Office of Science of the United States Department of Energy under contract number DE-AC02-05CH11231. Alfons Stams acknowledges support by an ERC (European Research Counsil) advanced grant (project 323009). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Membrane Concentrate Recirculation to Activated Sludge:Balancing Organic Micropollutant Removal and Salt Retention

Current wastewater treatment plants have not been designed to remove organic micropollutants (OMPs) that are now prevalent in surface waters. This desktop study investigates the Membrane Concentrate Recirculation to Activated Sludge (MCRAS) process, which enhances the removal of the OMP by combining conventional activated sludge treatment with membrane filtration and recirculation of the concentrate back to the activated sludge. The process limits the release of the OMP to the environment and offers an integrated approach for treating the concentrate. Four model OMPs (diclofenac, carbamazepine, ibuprofen, and triclosan) were studied using a mass balance model and literature data, comparing the performance of five membrane types (XLE, NF90, NF270, TFC-SR2, and dNF40). Four removal scenarios were identified based on biodegradation and membrane retention. Notably, with low biodegradation and high membrane retention, OMP removal can be significantly enhanced: diclofenac removal increased from 29 to 72% with an NF270 membrane and up to 97% with XLE or NF90 membranes. However, membrane use also leads to the accumulation of salts, as salts are not biodegradable. This highlights the need for a balance between the OMP and salt retention. Therefore, future membrane development should focus on improving the retention of the OMP while minimizing salt retention.</p

Multi-walled carbon nanotubes enhance methanogenesis from diverse organic compounds in anaerobic sludge and river sediments

Conductive nanomaterials affect anaerobic digestion (AD) processes usually by improving methane production. Nevertheless, their effect on anaerobic communities, and particularly on specific trophic groups such as syntrophic bacteria or methanogens, is not extensively reported. In this work, we evaluate the effect of multi-walled carbon nanotubes (MWCNT) on the activity of two different anaerobic microbial communities: an anaerobic sludge and a river sediment. Methane production by anaerobic sludge was assessed in the presence of different MWCNT concentrations, with direct methanogenic substrates (acetate, hydrogen) and with typical syntrophic substrates (ethanol, butyrate). MWCNT accelerated the initial specific methane production rate (SMPR) from all compounds, with a more pronounced effect on the assays with acetate and butyrate, i.e., 2.1 and 2.6 times, respectively. In the incubations with hydrogen and ethanol, SMPR increased 1.1 and 1.2 times. Experiments with the river sediment were performed in the presence of MWCNT and MWCNT impregnated with 2% iron (MWCNT-Fe). Cumulative methane production was 10.2 and 4.5 times higher in the assays with MWCNT-Fe and MWCNT, respectively, than in the assays without MWCNT. This shows the high potential of MWCNT toward bioenergy production, in waste/wastewater treatment or ex situ bioremediation in anaerobic digesters.This research was funded by the Portuguese Foundation for Science and Technology(FCT) under the scope of project MORE (POCI-01-0145-FEDER-016575), of the strategic funding of UIDB/04469/2020 unit and BioTecNorte operation (NORTE-01-0145-FEDER-000004) funded by the European Regional Development Fund under the scope of Norte2020-Programa Operacional Regional do Norte, as well as FCT/MCTES trough national funds (PIDDAC) and Base Funding-UIDB/50020/20 of the Associate Laboratory LSRE-LCM-funded by national funds rough FCT/MCTES (PIDDAC). Research of O.S.G.P.S. was funded by FCT under the Scientific Employment Stimulus-Institutional Call EECINST/00049/2018.info:eu-repo/semantics/publishedVersio

Peroperative administration of tranexamic acid in Roux-en-Y and one-anastomosis gastric bypass to reduce haemorrhage in patients with morbid obesity:protocol for randomised controlled trial (PATRY trial)

Introduction By implementation of Enhanced Recovery After Bariatric Surgery protocols and day-care surgery, early discharge poses a challenge if excessive bleeding occurs after bariatric surgery. Tranexamic acid (TXA) has demonstrated efficacy in other surgical fields and in bariatric pilot studies. This trial aims to assess the efficacy of peroperative administration of TXA in reducing haemorrhage in patients undergoing gastric bypass surgery. Method and analysis This is a multicentre, phase III, double-blind randomised controlled trial in six high-volume bariatric centres in the Netherlands. A total of 1524 eligible patients, aged 18 years or older, undergoing primary gastric bypass surgery (either Roux-en-Y gastric bypass or one-anastomosis gastric bypass) will be randomised between TXA and placebo (1:1, variable block, stratified for centre, day-care/overnight stay and type of surgery) after obtaining informed consent (2.5% less haemorrhage, power 80%, 2-sided-α 0.05 and 10% dropout). Exclusion criteria are pregnancy, amedical history of acute bleeding (without cause), venous thrombotic events (VTEs), epilepsy, anticoagulant use and iatrogenic bleeding during surgery (aside from staple line). The primary outcome is postoperative haemorrhage requiring intervention within 30 days postoperatively. Secondary outcome measures are staple line reinforcement, blood loss, duration of surgery, postoperative haemoglobin, vital parameters, minor and major complications, side effects of TXA (nausea, hypotension and VTE), length of hospital stay and directly made costs. Ethics and dissemination Written informed consent will be obtained from all participants. The protocol has been approved by the Medical Research Ethics Committees United, Nieuwegein, on 7 February 2023 (registration number: R22.102). Results will be disseminated through peer-reviewed publications and conferences.</p

Learning Curves of Ivor Lewis Totally Minimally Invasive Esophagectomy by Hospital and Surgeon Characteristics:A Retrospective Multinational Cohort Study

OBJECTIVE: To describe the pooled learning curves of Ivor Lewis totally minimally invasive esophagectomy (TMIE) in hospitals stratified by predefined hospital- and surgeon-related factors.BACKGROUND: Ivor Lewis (TMIE is known to have a long learning curve which is associated with considerable learning associated morbidity. It is unknown whether hospital and surgeon characteristics are associated with more efficient learning.METHODS: A retrospective analysis of prospectively collected data of consecutive Ivor Lewis TMIE patients in 14 European hospitals was performed. Outcome parameters used as proxy for efficient learning were learning curve length, learning associated morbidity, and the plateau level regarding anastomotic leakage and textbook outcome. Pooled incidences were plotted for the factor-based subgroups using generalized additive models and 2-phase models. Casemix predicted outcomes were plotted and compared with observed outcomes. The investigated factors included annual volume, TMIE experience, clinic visits, courses and fellowships followed, and proctor supervision.RESULTS: This study included 2121 patients. The length of the learning curve was shorter for centers with an annual volume &gt;50 compared to centers with an annual volume &lt;50. Analysis with an annual volume cut-off of 30 cases showed similar but less pronounced results. No outcomes suggesting more efficient learning were found for longer experience as consultant, visiting an expert clinic, completing a minimally invasive esophagectomy fellowship or implementation under proctor supervision.CONCLUSIONS: More efficient learning was observed in centers with higher annual volume. Visiting an expert clinic, completing a fellowship, or implementation under a proctor's supervision were not associated with more efficient learning.</p