Bioremediation of petroleum-contaminated soils: mathematical modelling as a tool for the simulation of alternative strategies

POCI-01-0145-FEDER-016575; ERC Grant n.º 323009; UID/BIO/04469/2013; POCI -01-0145-FEDER-006684; NORTE-01-0145-FEDER-000004; FCOMP-01-0124- FEDER-027462; SFRH/BPD/80528/2011info:eu-repo/semantics/publishedVersio

Multi-walled carbon nanotubes enhance methanogenesis from diverse organic compounds in anaerobic sludge and river sediments

Conductive nanomaterials affect anaerobic digestion (AD) processes usually by improving methane production. Nevertheless, their effect on anaerobic communities, and particularly on specific trophic groups such as syntrophic bacteria or methanogens, is not extensively reported. In this work, we evaluate the effect of multi-walled carbon nanotubes (MWCNT) on the activity of two different anaerobic microbial communities: an anaerobic sludge and a river sediment. Methane production by anaerobic sludge was assessed in the presence of different MWCNT concentrations, with direct methanogenic substrates (acetate, hydrogen) and with typical syntrophic substrates (ethanol, butyrate). MWCNT accelerated the initial specific methane production rate (SMPR) from all compounds, with a more pronounced effect on the assays with acetate and butyrate, i.e., 2.1 and 2.6 times, respectively. In the incubations with hydrogen and ethanol, SMPR increased 1.1 and 1.2 times. Experiments with the river sediment were performed in the presence of MWCNT and MWCNT impregnated with 2% iron (MWCNT-Fe). Cumulative methane production was 10.2 and 4.5 times higher in the assays with MWCNT-Fe and MWCNT, respectively, than in the assays without MWCNT. This shows the high potential of MWCNT toward bioenergy production, in waste/wastewater treatment or ex situ bioremediation in anaerobic digesters.This research was funded by the Portuguese Foundation for Science and Technology(FCT) under the scope of project MORE (POCI-01-0145-FEDER-016575), of the strategic funding of UIDB/04469/2020 unit and BioTecNorte operation (NORTE-01-0145-FEDER-000004) funded by the European Regional Development Fund under the scope of Norte2020-Programa Operacional Regional do Norte, as well as FCT/MCTES trough national funds (PIDDAC) and Base Funding-UIDB/50020/20 of the Associate Laboratory LSRE-LCM-funded by national funds rough FCT/MCTES (PIDDAC). Research of O.S.G.P.S. was funded by FCT under the Scientific Employment Stimulus-Institutional Call EECINST/00049/2018.info:eu-repo/semantics/publishedVersio

Aerobic nonylphenol degradation and nitro-nonylphenol formation by microbial cultures from sediments

Nonylphenol (NP) is an estrogenic pollutant which is widely present in the aquatic environment. Biodegradation of NP can reduce the toxicological risk. In this study, aerobic biodegradation of NP in river sediment was investigated. The sediment used for the microcosm experiments was aged polluted with NP. The biodegradation of NP in the sediment occurred within 8 days with a lag phase of 2 days at 30°C. During the biodegradation, nitro-nonylphenol metabolites were formed, which were further degraded to unknown compounds. The attached nitro-group originated from the ammonium in the medium. Five subsequent transfers were performed from original sediment and yielded a final stable population. In this NP-degrading culture, the microorganisms possibly involved in the biotransformation of NP to nitro-nonylphenol were related to ammonium-oxidizing bacteria. Besides the degradation of NP via nitro-nonylphenol, bacteria related to phenol-degrading species, which degrade phenol via ring cleavage, are abundantly present

Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601T

The genomes of the Betaproteobacteria Alicycliphilus denitrificans strains BC and K601T have been sequenced to get insight into the physiology of the two strains. Strain BC degrades benzene with chlorate as electron acceptor. The cyclohexanol-degrading denitrifying strain K601T is not able to use chlorate as electron acceptor, while strain BC cannot degrade cyclohexanol. The 16S rRNA sequences of strains BC and K601T are identical and the fatty acid methyl ester patterns of the strains are similar. Basic Local Alignment Search Tool (BLAST) analysis of predicted open reading frames of both strains showed most hits with Acidovorax sp. JS42, a bacterium that degrades nitro-aromatics. The genomes include strain-specific plasmids (pAlide201 in strain K601T and pAlide01 and pAlide02 in strain BC). Key genes of chlorate reduction in strain BC were located on a 120 kb megaplasmid (pAlide01), which was absent in strain K601T. Genes involved in cyclohexanol degradation were only found in strain K601T. Benzene and toluene are degraded via oxygenase-mediated pathways in both strains. Genes involved in the meta-cleavage pathway of catechol are present in the genomes of both strains. Strain BC also contains all genes of the ortho-cleavage pathway. The large number of mono- and dioxygenase genes in the genomes suggests that the two strains have a broader substrate range than known thus far.This research was supported by the Technology Foundation, the Applied Science Division (STW) of the Netherlands Organization for Scientific Research (NWO), project number 08053, the graduate school WIMEK (Wageningen Institute for Environment and Climate Research, which is part of SENSE Research School for Socio-Economic and Natural Sciences of the Environment, www.wimek-new.wur.nl and www.sense.nl), SKB (Dutch Centre for Soil Quality Management and Knowledge Transfer, www.skbodem.nl) and the Consolider project CSD-2007-00055. The research was incorporated in the TRIAS (TRIpartite Approaches 469 toward Soil systems processes) program (http://www.nwo.nl/en/research-and-results/programmes/alw/trias-tripartite-approach-to-soil-system-processes/index. html). Flávia Talarico Saia was supported by a FAPESP (the State of São Paulo Research Foundation) scholarship (2006-01997/5). The work conducted by the DOE JGI is supported by the Office of Science of the United States Department of Energy under contract number DE-AC02-05CH11231. Alfons Stams acknowledges support by an ERC (European Research Counsil) advanced grant (project 323009). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Supplemental data for the paper: Biodegradation and adsorption of micropollutants by biological activated carbon from a drinking water production plant

The presence of micropollutants in surface water is a potential threat for the production of high quality and safe drinking water. Adsorption of micropollutants onto granular activated carbon (GAC) in fixed-bed filters is often applied as a polishing step in the production of drinking water. Activated carbon can act as a carrier material for biofilm, hence biodegradation can be an additional removal mechanism for micropollutants in GAC filters. To assess the potential of biofilm to biodegrade micropollutants, it is necessary to distinguish adsorption from biodegradation as a removal mechanism. We performed experiments at 5 °C and 20 °C with biologically active and autoclaved GAC to assess the biodegradation of micropollutants by the biofilm grown on the GAC surface. Ten micropollutants were selected as model compounds. Three of them, iopromide, iopamidol and metformin, were biodegraded by the GAC biofilm. Additionally, we observed that temperature can increase or decrease adsorption, depending on the micropollutant studied. Finally, we compared the adsorption capacity of GAC used for more than 100,000 bed volumes and fresh GAC. We demonstrated that used GAC shows a higher adsorption capacity for guanylurea, metformin and hexamethylenetetramine and only a limited reduction in adsorption capacity for diclofenac and benzotriazole compared to fresh GAC

Chemical Dispersants: Oil Biodegradation Friend or Foe?

Chemical dispersants were used in response to the Deepwater Horizon oil spill in the Gulf of Mexico, both at the sea surface and the wellhead. Their effect on oil biodegradation is unclear, as studies showed both inhibition and enhancement. This study addresses the effect of Corexit on oil biodegradation by alkane and/or aromatic degrading bacterial culture in artificial seawater at different dispersant to oil ratios (DORs). Our results show that dispersant addition did not enhance oil biodegradation. At DOR 1:20, biodegradation was inhibited, especially when only the alkane degrading culture was present. With a combination of cultures, this inhibition was overcome after 10days. This indicates that initial inhibition of oil biodegradation can be overcome when different bacteria are present in the environment. We conclude that the observed inhibition is related to the enhanced dissolution of aromatic compounds into the water, inhibiting the alkane degrading bacteria