Cosmological Implications of the Tetron Model of Elementary Particles

Based on a possible solution to the tetron spin problem, a modification of the standard Big Bang scenario is suggested, where the advent of a spacetime manifold is connected to the appearance of tetronic bound states. The metric tensor is constructed from tetron constituents and the reason for cosmic inflation is elucidated. Furthermore, there are natural dark matter candidates in the tetron model. The ratio of ordinary to dark matter in the universe is calculated to be 1:5.Comment: 23 page

The development of a ε-polycaprolactone (PCL) scaffold for CNS repair

Potential treatment strategies for the repair of spinal cord injury (SCI) currently favour a combinatorial approach incorporating several factors, including exogenous cell transplantation and biocompatible scaffolds. The use of scaffolds for bridging the gap at the injury site is very appealing although there has been little investigation into CNS neural cell interaction and survival on such scaffolds before implantation. Previously we demonstrated that aligned micro-grooves 12.5-25 µm wide on ε-polycaprolactone (PCL) promoted aligned neurite orientation and supported myelination. In this study we identify the appropriate substrate and its topographical features required for the design of a 3D scaffold intended for transplantation in SCI. Using an established myelinating culture system of dissociated spinal cord cells, recapitulating many of the features of the intact spinal cord, we demonstrate that astrocytes plated on the topography secrete soluble factors(s) that delay oligodendrocyte differentiation but do not prevent myelination. However, as myelination does occur after a further 10-12 days in culture this does not prevent the use of PCL as a scaffold material as part of a combined strategy for the repair of SCI

Mutation of the Gene Encoding Cytotoxic Necrotizing Factor Type 1 (cnf\u3csub\u3e1\u3c/sub\u3e) Attenuates the Virulence of Uropathogenic \u3ci\u3eEscherichia coli\u3c/i\u3e

Cytotoxic necrotizing factor type 1 (CNF1) is a 115-kDa toxin that activates Rho GTPases and is produced by uropathogenic Escherichia coli (UPEC). While both epidemiological studies that link CNF1 production by E. coli with urinary tract disease and the cytopathic effects of CNF1 on cultured urinary tract cells are suggestive of a role for the toxin as a UPEC virulence factor, few in vivo studies to test this possibility have been reported. Therefore, in this investigation, we evaluated the importance of CNF1 in a murine model of urinary tract infection (UTI) by comparing the degree of colonization and damage induced by three different CNF1- producing E. coli strains with isogenic CNF1-deficient derivatives. The data from single-strain challenge experiments with C3H/HeOuJ mice indicated a trend toward higher counts of the wild-type strains in the urine and bladders of these animals up to 3 days after challenge in two of three strain pairs. Furthermore, this difference was statistically significant at day 2 of infection with one strain pair, C189 and C189cnf1. To control for the animal-to-animal variability inherent in this model, we infected C3H/HeOuJ mice with a mixture of CNF1-positive and -negative isogenic derivatives of CP9. The CNF1-positive strain was recovered in higher numbers than the CNF1-negative strain in the urine, bladders, and kidneys of the mice up to 9 days postinfection. These striking coinfection findings, taken with the trends observed in single-strain infections, led us to conclude that CNF1-negative strains were generally attenuated compared to the wild type in the C3H/HeOuJ mouse model of UTI. Furthermore, histopathological examination of bladder specimens from mice infected with CNF1-positive strains consistently showed deeper, more extensive inflammation than in those infected with the isogenic mutants. Lastly, we found that CNF1-positive strain CP9 was better able to resist killing by fresh human neutrophils than were CP9cnf1 bacteria. From these data in aggregate, we propose that CNF1 production increases the capacity of UPEC strains to resist killing by neutrophils, which in turn permits these bacteria to gain access to deeper tissue and persist better in the lower urinary tract

Search for anomalous top-gluon couplings at LHC revisited

Through top-quark pair productions at LHC, we study possible effects of nonstandard top-gluon couplings yielded by SU(3)xSU(2)xU(1) invariant dimension-6 effective operators. We calculate the total cross section and also some distributions for p p -> t tbar X as functions of two anomalous-coupling parameters, i.e., the chromoelectric and chromomagnetic moments of the top, which are constrained by the total cross section sigma(p pbar -> t tbar X) measured at Tevatron. We find that LHC might give us some chances to observe sizable effects induced by those new couplings.Comment: One comment and related two refs. added. Final version (to appear in Eur.Phys.J. C

Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis

Oesophageal adenocarcinoma (EAC) incidence is rapidly increasing in Western countries. A better understanding of EAC underpins efforts to improve early detection and treatment outcomes. While large EAC exome sequencing efforts to date have found recurrent loss-offunction mutations, oncogenic driving events have been underrepresented. Here we use a combination of whole-genome sequencing (WGS) and single-nucleotide polymorphism-array profiling to show that genomic catastrophes are frequent in EAC, with almost a third (32%, n¼40/123) undergoing chromothriptic events. WGS of 22 EAC cases show that catastrophes may lead to oncogene amplification through chromothripsis-derived double-minute chromosome formation (MYC and MDM2) or breakage-fusion-bridge (KRAS, MDM2 and RFC3). Telomere shortening is more prominent in EACs bearing localized complex rearrangements. Mutational signature analysis also confirms that extreme genomic instability in EAC can be driven by somatic BRCA2 mutations. These findings suggest that genomic catastrophes have a significant role in the malignant transformation of EAC

The GDH Sum Rule and Related Integrals

The spin structure of the nucleon resonance region is analyzed on the basis of our phenomenological model MAID. Predictions are given for the Gerasimov-Drell-Hearn sum rule as well as generalized integrals over spin structure functions. The dependence of these integrals on momentum transfer is studied and rigorous relationships between various definitions of generalized Gerasimov-Drell-Hearn integrals and spin polarizabilities are derived. These results are compared to the predictions of chiral perturbation theory and phenomenological models.Comment: 15 pages LaTeX including 5 figure

QCD corrections to decay-lepton polar and azimuthal angular distributions in e+e- -> t tbar in the soft-gluon approximation

QCD corrections to order alpha_s in the soft-gluon approximation to angular distributions of decay charged leptons in the process e+e- -> t tbar followed by semileptonic decay of t or tbar, are obtained in the e+e- centre-of-mass frame. As compared to distributions in the top rest frame, these have the advantage that they would allow direct comparison with experiment without the need to reconstruct the top rest frame. The results also do not depend on the choice of a spin quantization axis for t or tbar. Analytic expression for the triple distribution in the polar angle of t and polar and azimuthal angles of the lepton is obtained. Analytic expression is also derived for the distribution in the charged-lepton polar angle. Numerical values are discussed for total c.m. energies of 400 GeV, 800 GeV and 1500 GeV.Comment: 21 pages, Latex, 6 figures included in the submission. To appear in Pramana - Journal of Physics; expanded version of hep-ph/0011321, v

Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome

Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome. Am J Physiol Endocrinol Metab 315: E1087–E1097, 2018. First published August 21, 2018; doi:10.1152/ajpendo.00058.2018.—A 2-day workshop organized by the National Institutes of Health and U.S. Department of Agriculture included 16 presentations focused on the role of diet in alterations of the gastrointestinal microbiome, primarily that of the colon. Although thousands of research projects have been funded by U.S. federal agencies to study the intestinal microbiome of humans and a variety of animal models, only a minority addresses dietary effects, and a small subset is described in sufficient detail to allow reproduction of a study. Whereas there are standards being developed for many aspects of microbiome studies, such as sample collection, nucleic acid extraction, data handling, etc., none has been proposed for the dietary component; thus this workshop focused on the latter specific point. It is important to foster rigor in design and reproducibility of published studies to maintain high quality and enable designs that can be compared in systematic reviews. Speakers addressed the influence of the structure of the fermentable carbohydrate on the microbiota and the variables to consider in design of studies using animals, in vitro models, and human subjects. For all types of studies, strengths and weaknesses of various designs were highlighted, and for human studies, comparisons between controlled feeding and observational designs were discussed. Because of the lack of published, best-diet formulations for specific research questions, the main recommendation is to describe dietary ingredients and treatments in as much detail as possible to allow reproduction by other scientists

Higgs production as a probe of anomalous top couplings

The LHC may be currently seeing the first hints of the Higgs boson. The dominant production mode for the Higgs at the LHC involves a top-quark loop. An accurate measurement of Higgs production cross-sections and decay widths can thus be used to obtain limits on anomalous top couplings. We find that such an exercise could potentially yield constraints that are stronger than those derived from low-energy observables as well as direct bounds expected from the top pair-production process.Comment: Version published in JHE