Genetics of chronic kidney disease stages across ancestries: The PAGE study

Background: Chronic kidney disease (CKD) is common and disproportionally burdens United States ethnic minorities. Its genetic determinants may differ by disease severity and clinical stages. To uncover genetic factors associated CKD severity among high-risk ethnic groups, we performed genome-wide association studies (GWAS) in diverse populations within the Population Architecture using Genomics and Epidemiology (PAGE) study. Methods: We assembled multi-ethnic genome-wide imputed data on CKD non-overlapping cases [4,150 mild to moderate CKD, 1,105 end-stage kidney disease (ESKD)] and non-CKD controls for up to 41,041 PAGE participants (African Americans, Hispanics/Latinos, East Asian, Native Hawaiian, and American Indians). We implemented a generalized estimating equation approach for GWAS using ancestry combined data while adjusting for age, sex, principal components, study, and ethnicity. Results: The GWAS identified a novel genome-wide associated locus for mild to moderate CKD nearby NMT2 (rs10906850, p = 3.7 × 10-8) that replicated in the United Kingdom Biobank white British (p = 0.008). Several variants at the APOL1 locus were associated with ESKD including the APOL1 G1 rs73885319 (p = 1.2 × 10-9). There was no overlap among associated loci for CKD and ESKD traits, even at the previously reported APOL1 locus (p = 0.76 for CKD). Several additional loci were associated with CKD or ESKD at p-values below the genome-wide threshold. These loci were often driven by variants more common in non-European ancestry. Conclusion: Our genetic study identified a novel association at NMT2 for CKD and showed for the first time strong associations of the APOL1 variants with ESKD across multi-ethnic populations. Our findings suggest differences in genetic effects across CKD severity and provide information for study design of genetic studies of CKD in diverse populations. Copyright © 2019 Lin, Nadkarni, Tao, Graff, Fornage, Buyske, Matise, Highland, Wilkens, Carlson, Park, Setiawan, Ambite, Heiss, Boerwinkle, Lin, Morris, Loos, Kooperberg, North, Wassel and Franceschini. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms

Florística da vegetação arbustivo - arbórea colonizadora de uma área degradada por mineração de caulim, em Brás Pires, MG

Este estudo teve como objetivos analisar a composição florística da vegetação arbustivo-arbórea colonizadora de uma área degradada por mineração de caulim, em Brás Pires, MG, compará-la com outros fragmentos florestais e caracterizar aspectos de auto-ecologia das espécies e o solo da área. O levantamento florístico abrangeu uma área de 0,5 ha, subdividida em 50 parcelas contíguas de 10 m x 10 m. Foram incluídos todos os indivíduos com CAP igual ou superior a 10 cm. A composição florística é o resultado desse levantamento acrescida de coletas fora da área de amostragem, totalizando 64 espécies, distribuídas em 50 gêneros e 30 famílias. As famílias com maior número de espécies foram Leguminosae (11), Annonaceae (5), Lauraceae e Melastomataceae (4), enquanto o gênero mais rico foi Machaerium (3). A análise do substrato, nas condições em que se encontrava, revelou que este não impedia o estabelecimento da vegetação. A síndrome de dispersão preponderante era a zoocórica, destacando-se a importância de indivíduos remanescentes, fragmentos próximos e sua fauna associada. A maior similaridade florística ocorreu com o fragmento em Cruzeiro, SP, estando ambas as áreas em início de sucessão.This study aimed to analyze the floristic composition of shrub-tree vegetation colonizing an area degraded by kaolin mining in Brás Pires, MG, compare it with other forest fragments and characterize ecological aspects of species and soil of the area. The sampled area was 0.5 ha subdivided in 50 grid plots of 10x10 meters each. All individuals included had CAP equal or larger than 10cm. The floristic composition is the result of the sampled area plus species collected outside of it. A total of 64 species was obtained, distributed in 50 genera and 30 families. The families with the greater number of species were Leguminosae (11), Annonaceae (5), Lauraceae e Melastomataceae (4), while the richest genus was Machaerium (3). The soil analysis revealed that it had not impaired the vegetation colonization. The main dispersal syndrome was zoochorous, showing the importance of remnant individuals, surroundings forest fragments and its fauna. The greatest floristic similarity occurred in Cruzeiro, SP, being both areas at the same successional stage

Composição Florística do estrato arbóreo da Floresta Estacional Semidecidual na Planície Aluvial do rio Doce, Linhares, ES, Brasil Floristic composition of the tree layer in Atlantic forest on the rio Doce alluvial floodplain, Espírito Santo State, Brazil

Este trabalho apresenta a flora de espécies arbóreas e palmeiras na floresta estacional semidecidual na planície aluvial do rio Doce, uma área de cerca de 20.000 ha, a partir de Linhares (ES) até próximo à foz no oceano atlântico. Foram determinadas 408 espécies (27 classificadas em gênero) e 59 famílias, entre arbóreas e palmeiras. Por meio da análise de agrupamento, foi evidenciado que a floresta do rio Doce é muito semelhante floristicamente à floresta estacional dos tabuleiros terciários, que estas se agrupam com as florestas estacionais do rio Doce em MG e que, por sua vez, todas estas se agrupam com as florestas ombrófilas do sul da Bahia, sendo o conjunto nitidamente separado das outras formações ombrófilas costeiras. Foram encontradas dezenas de espécies deocorrência restrita ou pouco frequentes em levantamentos na floresta atlântica, enfatizando a importância da área para conservação da biodiversidade. Pelo fato das matas de cacau na região abrangerem mais de 80% dessa área, sugere-se a delimitação de uma Área de Proteção Ambiental, que permita conciliar o cultivo do cacau com a proteção da biodiversidade.<br>The tree and palm flora was studied in the Atlantic forest of the rio Doce alluvial floodplain, in a 20,000ha area, between Linhares (Espírito Santo State) and the Atlantic Ocean. The floristic survey recorded 408 species and 59 families. Floristic composition was compared to other forests of São Paulo, Minas Gerais, Bahia and Rio de Janeiro states using cluster analysis. The forest flora of the study area was most similar to that of forests in Espírito Santo, Minas Gerais, and Bahia. Dozens of species in the study area are restricted and rare in Atlantic forest; this area deserves special attention for biodiversity conservation. The Brazilian government should pay heed to the biological importance of this area and declare it an Environmental Protection Area, a type of conservation unit where sustained exploitation of resources is legal. We understand that, in practical terms, this sort of conservation unit is not very efficient in conserving natural resources, but it would be a start and might contribute to improved awareness, especially by local farmers and politicians