Elongation factor P: Function and effects on bacterial fitness.

The elongation phase of translation is promoted by three universal elongation factors, EF-Tu, EF-Ts, and EF-G in bacteria and their homologs in archaea and eukaryotes. Recent findings demonstrate that the translation of a subset of mRNAs requires a fourth elongation factor, EF-P in bacteria or the homologous factors a/eIF5A in other kingdoms of life. EF-P prevents the ribosome from stalling during the synthesis of proteins containing consecutive Pro residues, such as PPG, PPP, or longer Pro clusters. The efficient and coordinated synthesis of such proteins is required for bacterial growth, motility, virulence, and stress response. EF-P carries a unique post-translational modification which contributes to its catalytic proficiency. The modification enzymes, which are lacking in higher eukaryotes, provide attractive new targets for the development of new, highly specific antimicrobials

Non-commutative Euclidean structures in compact spaces

Based on results for real deformation parameter q we introduce a compact non- commutative structure covariant under the quantum group SOq(3) for q being a root of unity. To match the algebra of the q-deformed operators with necesarry conjugation properties it is helpful to define a module over the algebra genera- ted by the powers of q. In a representation where X is diagonal we show how P can be calculated. To manifest some typical properties an example of a one-di- mensional q-deformed Heisenberg algebra is also considered and compared with non-compact case.Comment: Changed conten

Mixed Heisenberg Chains. I. The Ground State Problem

We consider a mechanism for competing interactions in alternating Heisenberg spin chains due to the formation of local spin-singlet pairs. The competition of spin-1 and spin-0 states reveals hidden Ising symmetry of such alternating chains.Comment: 7 pages, RevTeX, 4 embedded eps figures, final versio

Existence of the magnetization plateau in a class of exactly solvable Ising-Heisenberg chains

The mapping transformation technique is applied to obtain exact results for the spin-1/2 and spin-S (S=1/2,1) Ising-Heisenberg antiferromagnetic chain in the presence of an external magnetic field. Within this scheme, a field-induced first-order metamagnetic transition resulting in multiplateau magnetization curves, is investigated in detail. It is found that the scenario of the plateau formation depends fundamentally on the ratio between Ising and Heisenbrg interaction constants, as well as on the anisotropy strength of the XXZ Heisenberg interaction.Comment: 16 pages, 10 figures, submitted to J. Phys: Condens. Matte

Ground state and low excitations of an integrable chain with alternating spins

An anisotropic integrable spin chain, consisting of spins $s=1$ and $s=\frac{1}{2}$, is investigated \cite{devega}. It is characterized by two real parameters $\bar{c}$ and $\tilde{c}$, the coupling constants of the spin interactions. For the case $\bar{c}<0$ and $\tilde{c}<0$ the ground state configuration is obtained by means of thermodynamic Bethe ansatz. Furthermore the low excitations are calculated. It turns out, that apart from free magnon states being the holes in the ground state rapidity distribution, there exist bound states given by special string solutions of Bethe ansatz equations (BAE) in analogy to \cite{babelon}. The dispersion law of these excitations is calculated numerically.Comment: 16 pages, LaTeX, uses ioplppt.sty and PicTeX macro

Thermodynamics and conformal properties of XXZ chains with alternating spins

The quantum periodic XXZ chain with alternating spins is studied. The properties of the related R-matrix and Hamiltonians are discussed. A compact expression for the ground state energy is obtained. The corresponding conformal anomaly is found via the finite-size computations and also by means of the Bethe ansatz method. In the presence of an external magnetic field, the magnetic susceptibility is derived. The results are also generalized to the case of a chain containing several different spins.Comment: 28 pages, LaTeX2

Properties of the chiral spin liquid state in generalized spin ladders

We study zero temperature properties of a system of two coupled quantum spin chains subject to fields explicitly breaking time reversal symmetry and parity. Suitable choice of the strength of these fields gives a model soluble by Bethe Ansatz methods which allows to determine the complete magnetic phase diagram of the system and the asymptotics of correlation functions from the finite size spectrum. The chiral properties of the system for both the integrable and the nonintegrable case are studied using numerical techniques.Comment: 19 pages, 9eps figures, Late

Robust Poisson Surface Reconstruction

Abstract. We propose a method to reconstruct surfaces from oriented point clouds with non-uniform sampling and noise by formulating the problem as a convex minimization that reconstructs the indicator func-tion of the surface’s interior. Compared to previous models, our recon-struction is robust to noise and outliers because it substitutes the least-squares fidelity term by a robust Huber penalty; this allows to recover sharp corners and avoids the shrinking bias of least squares. We choose an implicit parametrization to reconstruct surfaces of unknown topology and close large gaps in the point cloud. For an efficient representation, we approximate the implicit function by a hierarchy of locally supported basis elements adapted to the geometry of the surface. Unlike ad-hoc bases over an octree, our hierarchical B-splines from isogeometric analysis locally adapt the mesh and degree of the splines during reconstruction. The hi-erarchical structure of the basis speeds-up the minimization and efficiently represents clustered data. We also advocate for convex optimization, in-stead isogeometric finite-element techniques, to efficiently solve the min-imization and allow for non-differentiable functionals. Experiments show state-of-the-art performance within a more flexible framework.

Adaptive isogeometric analysis for phase‐field modeling of anisotropic brittle fracture

The surface energy a phase‐field approach to brittle fracture in anisotropic materials is also anisotropic and gives rise to second‐order gradients in the phase field entering the energy functional. This necessitates C 1 continuity of the basis functions which are used to interpolate the phase field. The basis functions which are employed in isogeometric analysis (IGA), such as nonuniform rational B‐splines and T‐splines naturally possess a higher order continuity and are therefore ideally suited for phase‐field models which are equipped with an anisotropic surface energy. Moreover, the high accuracy of spline discretizations, also relative to their computational demand, significantly reduces the fineness of the required discretization. This holds a fortiori if adaptivity is included. Herein, we present two adaptive refinement schemes in IGA, namely, adaptive local refinement and adaptive hierarchical refinement, for phase‐field simulations of anisotropic brittle fracture. The refinement is carried out using a subdivision operator and exploits the Bézier extraction operator. Illustrative examples are included, which show that the method can simulate highly complex crack patterns such as zigzag crack propagation. An excellent agreement is obtained between the solutions from global refinement and adaptive refinement, with a reasonable reduction of the computational effort when using adaptivity